Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_O17
(853 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110487-5|CAB54428.1| 237|Caenorhabditis elegans Hypothetical ... 31 1.0
AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical ... 31 1.0
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 30 2.4
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 30 2.4
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 30 2.4
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 30 2.4
Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical p... 29 5.5
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 29 5.5
U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related... 29 5.5
U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related... 29 5.5
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 5.5
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 5.5
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 29 5.5
AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-relat... 29 5.5
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 28 7.3
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 9.7
AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical ... 28 9.7
>AL110487-5|CAB54428.1| 237|Caenorhabditis elegans Hypothetical
protein Y39E4B.6 protein.
Length = 237
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 236 QLIKQVADNKRLCQTVGCGKETENKLLLQIREAEQVSDFERILNTNAILCERAKKHV 406
+L+++ D + L + +G KETEN+ L + A +S E + +T AI+ ++K V
Sbjct: 179 ELLERDQDTQVLTRELG-SKETENRHLRSLLSAHGISPDEPVTSTTAIVVGQSKSPV 234
>AC024859-1|ABA00161.2| 443|Caenorhabditis elegans Hypothetical
protein Y71H2AM.9 protein.
Length = 443
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +2
Query: 431 KPSASVLPRPRSSYSLYTVSQAYHYLFRQH------EESLQPLIDEYRQTTDEQR 577
KP S+ +S++ LYT+++ YH + H E +PL+ ++ TD +R
Sbjct: 92 KPVLSLTHHGKSNHQLYTLTEVYHKALKVHGSTEALEAHRRPLVAMRKELTDAER 146
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +2
Query: 512 RQHEESLQPLIDEYRQTTDEQRSACP 589
R+ E++ P+++++R+ TD+QRS P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +2
Query: 512 RQHEESLQPLIDEYRQTTDEQRSACP 589
R+ E++ P+++++R+ TD+QRS P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +2
Query: 512 RQHEESLQPLIDEYRQTTDEQRSACP 589
R+ E++ P+++++R+ TD+QRS P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +2
Query: 512 RQHEESLQPLIDEYRQTTDEQRSACP 589
R+ E++ P+++++R+ TD+QRS P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858
>Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical
protein F36G9.1 protein.
Length = 356
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 298 LFSAADSLTQPLVVGDLFYKLSRFRKGTSSK 206
LF+ SL P+V G L Y +K TSS+
Sbjct: 232 LFTVIPSLILPIVTGTLIYFFKTLKKSTSSR 262
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +3
Query: 381 SASARRNTCGAPTVPPLSRQH---PSCRDRARPTLSTP*AKRTTIFSD---STKNLFSPS 542
SAS N G PT P + QH P+ + +R + S A T S+ S++N +S +
Sbjct: 273 SASRGSNMAGNPTAPLTTTQHTFAPNSTETSRSSTSRGKAPGTEPKSEARYSSQNPYSDN 332
Query: 543 SMSTARPRTSNDPPA 587
S ST +P + PA
Sbjct: 333 S-STQKPEYESGYPA 346
>U61944-2|AAL56621.1| 705|Caenorhabditis elegans Dynamin related
protein protein1, isoform a protein.
Length = 705
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 566 DEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRI 700
DE + +LL ++W S+ + D A+RKE+E TDR+
Sbjct: 76 DESKRRRSNGTLLTDDWAMFEHTGSKVFTDFDAVRKEIEDETDRV 120
>U61944-1|AAL56622.1| 712|Caenorhabditis elegans Dynamin related
protein protein1, isoform b protein.
Length = 712
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 566 DEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRI 700
DE + +LL ++W S+ + D A+RKE+E TDR+
Sbjct: 76 DESKRRRSNGTLLTDDWAMFEHTGSKVFTDFDAVRKEIEDETDRV 120
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 411 APTVPPLSRQHPSCRDRARPTLSTP*AKRTTIFSDSTKNLFSPSSMS-TARPRTS-NDPP 584
APTVPP++ P+ T +T TT + +T + +PS+++ T RP T P
Sbjct: 675 APTVPPVTTTTPTTTTSTTTTTTT--TTTTTQTTPTTPVVTTPSTITPTTRPVTQPASQP 732
Query: 585 ARRRAC*ATT 614
A + A TT
Sbjct: 733 ATQPATTPTT 742
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 411 APTVPPLSRQHPSCRDRARPTLSTP*AKRTTIFSDSTKNLFSPSSMS-TARPRTS-NDPP 584
APTVPP++ P+ T +T TT + +T + +PS+++ T RP T P
Sbjct: 731 APTVPPVTTTTPTTTTSTTTTTTT--TTTTTQTTPTTPVVTTPSTITPTTRPVTQPASQP 788
Query: 585 ARRRAC*ATT 614
A + A TT
Sbjct: 789 ATQPATTPTT 798
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 411 APTVPPLSRQHPSCRDRARPTLSTP*AKRTTIFSDSTKNLFSPSSMS-TARPRTS-NDPP 584
APTVPP++ P+ T +T TT + +T + +PS+++ T RP T P
Sbjct: 554 APTVPPVTTTTPTTTTSTTTTTTT--TTTTTQTTPTTPVVTTPSTITPTTRPVTQPASQP 611
Query: 585 ARRRAC*ATT 614
A + A TT
Sbjct: 612 ATQPATTPTT 621
>AF166274-1|AAD49861.1| 705|Caenorhabditis elegans dynamin-related
protein protein.
Length = 705
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 566 DEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRI 700
DE + +LL ++W S+ + D A+RKE+E TDR+
Sbjct: 76 DESKRRRSNGTLLTDDWAMFEHTGSKVFTDFDAVRKEIEDETDRV 120
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +2
Query: 647 YEDDQALRKEVETITDRIIAAEVKASEVKQRSDKRSKNFXVNLXGLIGLH 796
YE+ + +E E + DR+ AA++ + V+ + K + + ++ H
Sbjct: 682 YEETKVQLREAEDLADRLQAAQILSGNVESKFSDMQKESKIEMERILDNH 731
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +2
Query: 647 YEDDQALRKEVETITDRIIAAEVKASEVKQRSDKRSKNFXVNLXGLIGLH 796
YE+ + +E E + DR+ AA++ + V+ + K + + ++ H
Sbjct: 682 YEETKVQLREAEDLADRLQAAQILSGNVESKFSDMQKESKIEMERILDNH 731
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein
C05C10.2b protein.
Length = 1553
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 272 CQTVGCGKETENKLLLQIREAEQVSDFERILNTNAILCERAKK 400
C TV + +E ++++ E++SDF ++ N + RAK+
Sbjct: 1394 CGTVDAFQGSEKEIIIMCSTNERISDFMQLSNRLNVAMSRAKQ 1436
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein
C05C10.2a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 272 CQTVGCGKETENKLLLQIREAEQVSDFERILNTNAILCERAKK 400
C TV + +E ++++ E++SDF ++ N + RAK+
Sbjct: 1394 CGTVDAFQGSEKEIIIMCSTNERISDFMQLSNRLNVAMSRAKQ 1436
>AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical
protein W03F8.10 protein.
Length = 587
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 623 NLQDLSEFYEDD-QALRKEVETITDRIIAAEVKASEVKQ 736
N+ +F + D + L+KEV+ +T I E KAS++K+
Sbjct: 85 NITQAVDFAQKDLEHLQKEVDKVTKATIELEDKASKIKE 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,036,719
Number of Sequences: 27780
Number of extensions: 302540
Number of successful extensions: 1197
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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