Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O17
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.67 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.67 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   2.0  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 635 LSEFYEDDQALRKEVETITDRIIAAEVKASEVKQRSDK 748
           +SE +E D  L + +E +TD++     +    KQ++D+
Sbjct: 345 MSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTDR 382


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 635 LSEFYEDDQALRKEVETITDRIIAAEVKASEVKQRSDK 748
           +SE +E D  L + +E +TD++     +    KQ++D+
Sbjct: 345 MSEQFEADYKLTRNLELLTDKLQQTYRELDGEKQKTDR 382


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 437 SASVLPRPRSSYSLYTVSQAYHYLFRQHEESLQPLIDEYRQTTDEQR 577
           SAS +    SSYSL    Q   +L  +    +Q +I+E  Q+T+++R
Sbjct: 191 SASAMVLGLSSYSLTEFQQRRAFLETRQSLEVQLVIEE--QSTEQER 235


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 689 TDRIIAAEVKASEVKQRSDKRSKNFXVN 772
           T+++   E+++   K+ +DK+ +NF V+
Sbjct: 72  TEKLNQLEIESDNSKEVNDKKEENFIVD 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,881
Number of Sequences: 438
Number of extensions: 3446
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)