Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O13
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...   231   5e-62
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    27   2.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.8  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   3.7  

>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score =  231 bits (566), Expect = 5e-62
 Identities = 98/185 (52%), Positives = 138/185 (74%)
 Frame = +2

Query: 2   NFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNFIEF 181
           +F+Y F+ENGL  ++ G++L+S+S +  LGE+K Q+++NF + Y++++ +PVKRG FIEF
Sbjct: 73  SFDYAFAENGLTAYRYGQQLASQSFIAWLGEEKYQKLVNFCLHYIADLDIPVKRGTFIEF 132

Query: 182 RSSMLNICPVGRSCNQIERDQFSEYDSKHKVRQQFVEALQSKFKDSGLKFALGGQISIDV 361
           R+ M+NI PVGR+ N  ER++F  +D   K+R   V+ L+ KFKD GL F++GGQIS DV
Sbjct: 133 RNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFKDYGLTFSIGGQISFDV 192

Query: 362 FPIGWDKTYCLNHIASENFVEIHFFGDKTDPGGNDHEIYNDSRTVGHRVSSPSDTEMQVK 541
           FP GWDKTYCL H+  E F  IHFFGDKT  GGND+EI+ D RT+GH V++P DT  ++K
Sbjct: 193 FPAGWDKTYCLQHVEKEGFDTIHFFGDKTYKGGNDYEIFVDPRTIGHSVTNPDDTIAELK 252

Query: 542 KCLNM 556
           K  N+
Sbjct: 253 KIFNI 257


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 485 SHCKFHDH-SHQGLFCLQRSEFQQNSH 408
           S  +FHD    +   CL RSEF +N H
Sbjct: 128 SDTRFHDEFDRESRACLHRSEFPKNPH 154


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 140 WTCNPWRSLLPLAVFV 93
           WT N W++LLP++ ++
Sbjct: 27  WTFNKWKALLPVSAYI 42


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 102 SFCSPKWLT---MLSELNFFPFL*CTSPFSLN 16
           S CSP W++   +L+ L F P + C++   LN
Sbjct: 121 STCSPLWISVIYLLNPLTFLPGIACSADMILN 152


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +2

Query: 23  ENGLVHHKNGKKLSSESIVNHLGEQKLQEVI--NFAMGYMSNIKLPVKRGNFIEFRSSML 196
           E+G+   + G++  +++IV H+G Q L+  +  N     +  +     R  F + R  + 
Sbjct: 39  EDGIEESELGEEKDNKTIVLHIGSQNLRIGLASNKTPTTVPMVIARKMRAPFAQERCLLK 98

Query: 197 NICPVGRSCNQIERDQFSEYDSKHKV 274
           +IC V    N +  D  SE+DS  K+
Sbjct: 99  DICHVNEDGN-VAFD--SEFDSNLKL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,963
Number of Sequences: 5004
Number of extensions: 51307
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)