Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O13
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1626 + 34863691-34863762,34863895-34863939,34864047-348641...   227   7e-60
02_01_0309 - 2065874-2065930,2066024-2066200                           32   0.41 
07_03_0815 + 21707061-21707112,21707394-21708286,21709289-217094...    30   1.2  
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779...    30   1.6  
02_05_0893 + 32578890-32579003,32579325-32579554,32580147-32580768     28   5.0  

>04_04_1626 +
           34863691-34863762,34863895-34863939,34864047-34864113,
           34864234-34864310,34864570-34864605,34864687-34864742,
           34864816-34864915,34864995-34865090,34865167-34865256,
           34865466-34865517,34866101-34866156
          Length = 248

 Score =  227 bits (554), Expect = 7e-60
 Identities = 97/180 (53%), Positives = 134/180 (74%)
 Frame = +2

Query: 2   NFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNFIEF 181
           +++Y FSENGLV HKNG+ + ++S+ + LG+ +L+E INF + Y++++ +P+KRG FIEF
Sbjct: 65  DYDYCFSENGLVAHKNGELIGTQSLKSFLGDDQLKEFINFTLHYIADLDIPIKRGTFIEF 124

Query: 182 RSSMLNICPVGRSCNQIERDQFSEYDSKHKVRQQFVEALQSKFKDSGLKFALGGQISIDV 361
           RS MLN+ P+GR+C+Q ERD+F +YD  H +R + V  L+ KF    L F++GGQIS DV
Sbjct: 125 RSGMLNVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFAHLNLTFSIGGQISFDV 184

Query: 362 FPIGWDKTYCLNHIASENFVEIHFFGDKTDPGGNDHEIYNDSRTVGHRVSSPSDTEMQVK 541
           FP GWDKTYCL ++  E F EIHFFGDKT  GGND+EI+   RT+GH V+SP DT  Q +
Sbjct: 185 FPQGWDKTYCLRYL--EEFQEIHFFGDKTYKGGNDYEIFESDRTIGHTVTSPDDTAEQCR 242


>02_01_0309 - 2065874-2065930,2066024-2066200
          Length = 77

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
 Frame = +2

Query: 176 EFRSSMLNICPVGRSCN----QIERDQFSEY-DSKHKVRQQFVEALQSK 307
           E  + +LNI  + R CN    Q+ R+QF+E  DS++K RQQF E+   K
Sbjct: 30  ELDNLVLNI--ITRKCNSSVAQLNREQFAENKDSRYKKRQQFEESSPHK 76


>07_03_0815 +
           21707061-21707112,21707394-21708286,21709289-21709459,
           21709880-21710143,21710404-21710421
          Length = 465

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 180 NSMKLPLLTGNLMLD-M*PMAKFIT-SCSFCSPKWLTMLS 67
           N M L  + G L L+ + P  KF+T SC FCS  WL  ++
Sbjct: 200 NWMNLSAVRGLLRLNAVVPRLKFLTVSCCFCSSTWLVAMA 239


>02_04_0364 +
           22374735-22374749,22374903-22375076,22377858-22377935,
           22379270-22380407,22380507-22380901,22382230-22382416,
           22382872-22382942,22383705-22383755
          Length = 702

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
 Frame = +2

Query: 53  KKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGN--FIEFRSSMLNICPVG-RSC 223
           K+  S+S+ N    ++LQE ++ A   ++++++ ++R N    + RS++        RSC
Sbjct: 91  KEAESQSLANINKIKELQEQLHGAQDTVASLQIELQRSNTELEQARSTLAEERRNNLRSC 150

Query: 224 NQIERDQFSEYDSKHKVRQQFVEALQSKFKDSG 322
           N+I  ++ S   S+  ++ +     ++  K+SG
Sbjct: 151 NKINSNKNSSSSSRKHLQGRVSSKSKNTAKESG 183


>02_05_0893 + 32578890-32579003,32579325-32579554,32580147-32580768
          Length = 321

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/51 (21%), Positives = 22/51 (43%)
 Frame = +2

Query: 275 RQQFVEALQSKFKDSGLKFALGGQISIDVFPIGWDKTYCLNHIASENFVEI 427
           +  +    + KFK+   +    G+   DV  I W+ T+ + H    N  ++
Sbjct: 57  KAHYANCREEKFKEFARRMLEAGEKGADVKGIDWESTFFVRHRPVSNLADL 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,113,573
Number of Sequences: 37544
Number of extensions: 291782
Number of successful extensions: 621
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)