Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O13
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 88  G*TKTARGNKLRHGLHVQH 144
           G T T+ G +L HG+  QH
Sbjct: 180 GTTTTSTGTRLLHGILSQH 198


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +2

Query: 23  ENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNF 172
           E  ++   + K + + +  N+   +KL   IN+       + +P+  GNF
Sbjct: 300 EPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVPVPVPIYYGNF 349


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 484 VIVNFMIIPTRVCFVSKEVNFNKIL 410
           VI+N ++    +CFV K++     L
Sbjct: 13  VIINVLLHGQVICFVCKDITSTSAL 37


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 248  SEYDSKHKVRQQFVEALQSKFKDSGLKFALGGQISIDVFPIGW 376
            S Y     V+ Q V      +++  +   +GG IS+D  P+G+
Sbjct: 936  SIYAQPQTVQDQIVSEY---YQNKPISEVIGGAISLDGKPLGF 975


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 129 VTCPTSNYQSREVISLNSDQVCLIFALLEDHV 224
           V  PT+NY +   +S     + L++  L+ H+
Sbjct: 182 VANPTANYSASTTLSHAEYSMLLVYFHLQRHM 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,520
Number of Sequences: 438
Number of extensions: 3323
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)