Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_O11
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 72 4e-14
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.9
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 26 2.5
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 2.5
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 26 2.5
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 3.3
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 3.3
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 3.3
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 25 4.4
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 4.4
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 25 5.8
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 5.8
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 5.8
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 7.6
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 25 7.6
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 25 7.6
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 72.1 bits (169), Expect = 4e-14
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Frame = +1
Query: 70 LDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVE---SAKWKAWN 240
+ F+Q A V+ K P+ DE L LY+L+KQAT+GD N +P GL++ KW AW
Sbjct: 1 MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKP-GLLDLKGKFKWNAWE 59
Query: 241 SRKGISQDDAKKQYIENAEKLHSKY 315
KG S++DA +YI ++L +KY
Sbjct: 60 ELKGKSKEDAASEYISFVDELKTKY 84
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 1.9
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 323 IYAYLEWSFSAFS-MYCFLASSWEMP 249
++ +L W + + +YCF SSW+ P
Sbjct: 4043 LFFFLSWLHATLAEIYCFTCSSWKEP 4068
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 2.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 194 AMLTSPMVACLYREYSARFSSSLGLVFQFLTLSA 93
AML+SP + ++YS F S ++ Q L ++A
Sbjct: 73 AMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTA 106
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 2.5
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 221 PSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLLRIK*ISYLN 358
P H V+ SP T +N S+ NS+P KLL+ I LN
Sbjct: 44 PYSDHARVSN-SPNTHRENNPSRSTDNSSPFLIKLLISFTPIYVLN 88
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 26.2 bits (55), Expect = 2.5
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -2
Query: 186 NITYGSLLVQGVQRKVLIVTGLGLPVPNLIGDLFELLVERHXVLSFEMQEVRVVGKVPI 10
++T+ +L VQR+V++ G P+ N + + F LL + L QE R ++PI
Sbjct: 420 SLTFTALDKLNVQRRVILS---GTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPI 475
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 3.3
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = +2
Query: 68 LSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAPSG------ 229
+S +++N SP R +P T+ L P P + +P+ +P
Sbjct: 385 VSRNSNNNSPEGYDNNRTNP-TVNNLPSYPTNLARPKAIKPMPTSIHGQTSPLSPIPPVH 443
Query: 230 -RHGTVAKASPKTMPRSNTSKMRRNSTPNTHKL 325
HG V+ P +P ++ MR +STP +H L
Sbjct: 444 TTHGLVSDIRP--LPSVSSPIMRADSTPISHNL 474
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 8 PIGTLPTTLTSCISKDNTXCLSTSNSNRS 94
P TLPT L SC +K +S N N S
Sbjct: 557 PRQTLPTRLDSCAAKLREAVISNENLNPS 585
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 106 RNWKTKPSDDENLALYSLYKQATIGDVNIAQPSG 207
RNW+T DD +LA + K++ +++ ++ G
Sbjct: 531 RNWQTTVFDDSDLATMGVNKESLSNEMDYSKSLG 564
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 151 YSLYKQATIGDVNIAQPSGLVESAKW 228
Y L+ + + D+N A+ +VESAKW
Sbjct: 150 YKLF-DSYVYDINTAEQERVVESAKW 174
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 94 ADKVRNWKTKPSDDENLALYSLYK 165
A+ V NW + +D ENL++ S ++
Sbjct: 526 AENVNNWMLETNDHENLSMQSHFE 549
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 239 FHAFHLALSTRPLGWAMLTSPMV 171
FHA L L +RP G+ + +P++
Sbjct: 304 FHAVRLTLRSRPAGFGLRCNPIL 326
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 189 HCPAQRSCGERQVEGMEQSQRHLPRRCQE 275
+CPAQR G V G S+R + + +E
Sbjct: 486 YCPAQREYGRLNVVGTLMSKRKIMKLVKE 514
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 5.8
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 203 AVLWRAPSGR--HGTVAKASPKTMPRSNTSKMRRNSTPNT 316
AVL R PSG GT+A P ++ N S RRNS+ ++
Sbjct: 453 AVLNR-PSGETCSGTLALYRPNSLALKNQSSHRRNSSTSS 491
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -2
Query: 183 ITYGSLLVQGVQRKVLIVTGLGLPVPNLIGDLFELLVERHXVLSFEMQEVR 31
I +G + G+ ++ + LG+ PN +G L + LV + +S +V+
Sbjct: 285 ILHGECVAIGMVKEAELARYLGILKPNAVGRLTKCLVSYNLPISVNDPKVK 335
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +2
Query: 17 TLPTTLTSCISKDNTXCLSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTS 166
T+P T++S ++ + +++S S I + P+P+ T +P +
Sbjct: 101 TVPATVSSEVTHTSEGYADSNDSRPSSISNSSESPAPINSATASMSPANN 150
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 326 IIYAYLEWSFSAFSMYCFLASSWEMPLRLFHAF 228
+ YAY E S A+ + F+ S+ +PL L H F
Sbjct: 120 LYYAYGE-SIYAYFHHLFIMDSFMLPLVLHHRF 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,164
Number of Sequences: 5004
Number of extensions: 38387
Number of successful extensions: 115
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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