Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_O11
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847... 73 1e-13
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369... 72 3e-13
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86... 64 7e-11
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 43 1e-04
03_06_0582 - 34891613-34891795,34892407-34892466,34893134-348932... 43 1e-04
11_06_0715 + 26552962-26553510,26553578-26555746 28 3.3
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 28 4.3
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841 28 4.3
11_04_0348 - 16632102-16632188,16632326-16632391,16632487-166325... 27 5.7
05_02_0150 - 7111090-7111225,7111251-7111458,7111705-7111774,711... 27 5.7
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392... 27 5.7
03_01_0463 + 3551764-3551897,3551989-3552046,3552148-3552255,355... 27 5.7
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 27 5.7
11_04_0288 - 15802010-15803506 27 7.5
08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261... 27 7.5
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 27 7.5
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 27 7.5
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 27 7.5
03_06_0051 + 31290431-31290610,31290727-31290849,31291771-312919... 27 10.0
>03_05_0107 -
20883353-20883627,20883739-20883801,20884608-20884725,
20885012-20885023
Length = 155
Score = 72.9 bits (171), Expect = 1e-13
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +1
Query: 64 MSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLV--ESAKWKAW 237
M L E F++ A+KV+ S+++ L LY LYKQAT+GDVN ++P + AKW AW
Sbjct: 1 MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVNTSRPGIFAQRDRAKWDAW 60
Query: 238 NSRKGISQDDAKKQYIENAEKLHSKYA 318
+ +G S+++A YI ++L + A
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQLQEEAA 87
>08_01_0417 -
3692247-3692329,3692442-3692504,3693233-3693350,
3694084-3694095
Length = 91
Score = 71.7 bits (168), Expect = 3e-13
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Frame = +1
Query: 64 MSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLV--ESAKWKAW 237
M L E F+Q A+K + S++ L LY LYKQAT+GDVN A+P + AKW AW
Sbjct: 1 MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTARPGIFAQRDRAKWDAW 60
Query: 238 NSRKGISQDDAKKQYIENAEKL 303
+ +G S+++A YI ++L
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQL 82
>06_01_0108 -
860080-860162,860276-860338,860857-860974,861481-861492
Length = 91
Score = 63.7 bits (148), Expect = 7e-11
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +1
Query: 64 MSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAW 237
M L E+F++ A+K + S+++ L LY LYKQAT+G V +P L + KW AW
Sbjct: 1 MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVTTGRPGIFNLKDRYKWDAW 60
Query: 238 NSRKGISQDDAKKQYIENAEKL 303
+ +G S+++A YI ++L
Sbjct: 61 KAVEGKSKEEAMADYITKVKQL 82
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 118 TKPSDDENLALYSLYKQATIGDVNIAQPSG--LVESAKWKAWNSRKGISQDDAKKQYIEN 291
T + L LY LYK AT G QPS L AKW AW+ + ++A ++YI
Sbjct: 109 TSVPEQAQLQLYGLYKIATEGPCTAPQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITV 168
Query: 292 AEKLHSKYA 318
++L ++
Sbjct: 169 VDELFPNWS 177
>03_06_0582 -
34891613-34891795,34892407-34892466,34893134-34893280,
34893502-34893657,34893745-34893828,34893907-34893995,
34894575-34894689,34894776-34894899,34895080-34895219,
34895868-34895929,34896042-34896108,34896185-34896295,
34896868-34896945,34897074-34897274,34897492-34897563,
34897630-34897693,34898084-34898154,34898328-34898474
Length = 656
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 130 DDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNSRKGISQDDAKKQYIENAEK 300
+D L LY LY+QAT+G N+ +P VE +KW +W+ + +A + +++ E+
Sbjct: 37 NDVALLLYGLYQQATVGPCNVPKPRAWNPVEQSKWTSWHGLGSMPSAEAMRLFVKILEE 95
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 165 LVQGVQRKVLIVTGLGLP---VPNLIGDLFEL 79
LV G R + ++ +GLP +PN+IGDLF L
Sbjct: 560 LVAGKCRYMSVLELIGLPKDNIPNVIGDLFNL 591
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = +2
Query: 191 LPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLLRIK*ISYLNYALS 370
+P PA PSG H + SP P S + KL ++ + + N L+
Sbjct: 5 IPPPAFFQFLPSGAHSSPHHQSPLRSPASERERYLAELLAERQKLAPFMQVLPFCNRLLN 64
Query: 371 HDFLK 385
+ L+
Sbjct: 65 QEILR 69
>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
Length = 534
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 248 LRLFHAFHLALSTRPLGWAMLTSPMVACLYREYSARFSSSLGLVFQFLTLSATCLNCSSR 69
LR + +A+ R L + + SP++ CL YS R L L L C+ C +
Sbjct: 230 LRELGLYCVAMEDRDLDFVLANSPVLECLGIYYSQRQIVLLRLASHSLRCVQICM-CIAE 288
Query: 68 DI 63
DI
Sbjct: 289 DI 290
>11_04_0348 -
16632102-16632188,16632326-16632391,16632487-16632571,
16632951-16633044,16633417-16633474,16633767-16633807,
16633919-16634018
Length = 176
Score = 27.5 bits (58), Expect = 5.7
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Frame = +1
Query: 31 PDLLHL--KR*HXMSLDEQFKQVADKVRNWK-----TKPSDDENLALYSL---YKQATIG 180
P LLHL + SL E ++AD VR+ + T +E L + + +G
Sbjct: 17 PQLLHLFSRFSFLTSLPEVKARIADAVRDKQEAVAVTTEIQEEILREMGIDPSFGIGCLG 76
Query: 181 DVNIAQPSGLVESAKWKAWNSRKGISQDDAKKQYIENAEKLHSKY 315
VN+ + K+ + +++ ++ D+A+ IE AEK+H+++
Sbjct: 77 KVNVMYEDDMELMVKFYQFVAKEEMAIDEAELDPIEFAEKIHAQH 121
>05_02_0150 -
7111090-7111225,7111251-7111458,7111705-7111774,
7112290-7112367
Length = 163
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +2
Query: 182 MLTLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTH 319
M+ SP W AP G G +A+ P+ S NTH
Sbjct: 35 MVINSSPKHTWFAPVGNKGALARIQPQVTELEGKVTSLSTSMENTH 80
>05_01_0479 -
3920992-3921513,3921643-3921756,3921905-3922482,
3922709-3923067,3923132-3923205
Length = 548
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 262 LGRCLCDCSMPSTWRSPQD 206
+ R CDC +W+SPQD
Sbjct: 188 ISRPFCDCMESFSWKSPQD 206
>03_01_0463 +
3551764-3551897,3551989-3552046,3552148-3552255,
3552664-3552721,3552788-3553014,3553085-3553145,
3553311-3553615
Length = 316
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/79 (21%), Positives = 34/79 (43%)
Frame = +1
Query: 73 DEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKAWNSRKG 252
DE + A++ + KP+ + +SLY AT ++ +++ KW A
Sbjct: 203 DETWSDCAEQ--GFAVKPTKGSAVLFFSLYPNATFDPGSLHGSCPVIQGEKWSATKWIHV 260
Query: 253 ISQDDAKKQYIENAEKLHS 309
S D+ ++ + E H+
Sbjct: 261 RSYDENGRRSSDKCEDQHA 279
>03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 27.5 bits (58), Expect = 5.7
Identities = 26/92 (28%), Positives = 38/92 (41%)
Frame = +2
Query: 26 TTLTSCISKDNTXCLSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPA 205
T+ C++ D +S+ S R+PI PV + TL T TS LT+
Sbjct: 790 TSWRPCVASDLMISVSSELSLRNPISSARVPQLPVQVLTLEATNMTSE----NLTV---T 842
Query: 206 VLWRAPSGRHGTVAKASPKTMPRSNTSKMRRN 301
VL SG V+ S T P S+ + +
Sbjct: 843 VLAPEASGSSSVVSLNSAPTTPNSSYDNLNES 874
>11_04_0288 - 15802010-15803506
Length = 498
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -2
Query: 114 PVPNLIGD---LFELLVERHXVLSFEMQEVRVVGKVPI 10
PV + + D +F LVER ++SF MQ +G +PI
Sbjct: 168 PVSDFLSDERNMFGRLVEREQIISFLMQPGNHLGVLPI 205
>08_02_0818 -
21524539-21524664,21524911-21524961,21525800-21526170,
21526497-21526852,21527926-21527996
Length = 324
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +1
Query: 91 VADKVRNWKTKP----SDDENLALYSLYKQAT 174
V D++ W P +D+EN + +LYK+AT
Sbjct: 241 VKDRIEEWYRPPWDRTADEENASFNALYKEAT 272
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 327 NNLCVFGVEFLRIFDVLLLGIVLGDAFATVP-CLPLGALHKTAGLGNVNITYGSLLVQGV 151
NN C F + L++F L L +FA C LG +T L +V G+ L G
Sbjct: 76 NNYCKFDDQRLQLFTSSLYLAALAASFAASRLCTRLGR-RRTMQLASVFFLGGTALCAGA 134
Query: 150 QRKVLIVTG 124
+++ G
Sbjct: 135 ANLAMLIVG 143
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 133 DENLALYSLYKQATIGDVNIAQPSGLVES 219
DE+ AL +L+ A + VNI QPS +VES
Sbjct: 476 DESSALDALHTLADLS-VNILQPSSIVES 503
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 112 WKTKPSDDENLALYSLYKQATIGDVNIAQ 198
WK S ++NLA +++Y T V++ Q
Sbjct: 138 WKVSRSSEQNLAFFAVYNMETTDIVSLYQ 166
>03_06_0051 +
31290431-31290610,31290727-31290849,31291771-31291928,
31292395-31292497,31293077-31293172,31293367-31293432,
31293500-31293619,31293905-31293991
Length = 310
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 97 DKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKA 234
+K K KP + L YSL TI ++ +++ KW A
Sbjct: 254 EKCIGLKVKPRKGDGLLFYSLMVNGTIDPTSLHGSCPVIKGEKWVA 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,012,183
Number of Sequences: 37544
Number of extensions: 274709
Number of successful extensions: 905
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -