Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O08
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0091 + 646299-649082                                             32   0.28 
11_06_0060 - 19695338-19695477,19695641-19695734,19695818-196959...    31   0.87 
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775...    29   2.0  
07_03_0734 + 21067747-21068569,21069678-21069812,21069967-210701...    28   4.6  
01_03_0013 + 11645786-11645853,11646674-11646802,11646906-116469...    28   4.6  
01_01_0893 + 7043130-7043182,7043309-7043335,7043461-7043560,704...    28   6.1  
03_04_0205 - 18485933-18488446                                         27   8.1  

>02_01_0091 + 646299-649082
          Length = 927

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 162 GTPGVQCRVSIFRTRFLEQALTGCESHQRHEQKHGEVMFGGHLNDVLRTI 13
           G P   C+V     + LEQ L    S     Q+H E  FG  +N VL T+
Sbjct: 554 GKPIEHCQVDSQNRKVLEQHLACAASEYPLRQEHDESYFGFSMNSVLMTL 603


>11_06_0060 -
           19695338-19695477,19695641-19695734,19695818-19695973,
           19696109-19696168,19696384-19696602,19696607-19697036,
           19698428-19698747
          Length = 472

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = -1

Query: 297 PRHIQHSATGTHFPSELKRY---PESQWQVAMKAVTQLVCFNSGSAQVGTPGVQCRVSIF 127
           P ++ H A       E++ +   PES W+V +  V +L   N+ +  +  PG  C  +++
Sbjct: 155 PGYLFHEARAVFNGMEVRYFDLLPESGWEVDLDGVQELADKNTVAMVIINPGNPCG-NVY 213

Query: 126 RTRFLEQALTGCESH 82
            +  L +A T   SH
Sbjct: 214 TSEHLAKASTELISH 228


>07_03_0735 +
           21075033-21075846,21077065-21077199,21077384-21077517,
           21077604-21077814,21078033-21078270,21078346-21078496,
           21078593-21078931
          Length = 673

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 193 GVFQFRVCTGRHARGSMSCEHFQDTISRTSSYW 95
           G+    + TGR + GS S +   D +SR   +W
Sbjct: 534 GILMIEIVTGRRSSGSYSFDQSYDLLSRVWEHW 566


>07_03_0734 +
           21067747-21068569,21069678-21069812,21069967-21070100,
           21070182-21070449,21070472-21070709,21070787-21070937,
           21071040-21071387
          Length = 698

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 193 GVFQFRVCTGRHARGSMSCEHFQDTISRTSSYW 95
           G+    + TGR + GS+S +   D +S    +W
Sbjct: 556 GILMIEIVTGRRSSGSLSFDQSNDLLSLVWEHW 588


>01_03_0013 +
           11645786-11645853,11646674-11646802,11646906-11646945,
           11647075-11647191
          Length = 117

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 309 LK*PPRHIQHSATGTHFPSELKRYPESQWQVAMKAV 202
           LK   R +       HF  E  RYP S+W++ + A+
Sbjct: 38  LKVEERSVVEQGAEGHFGGEASRYPFSRWRLGLAAL 73


>01_01_0893 +
           7043130-7043182,7043309-7043335,7043461-7043560,
           7045110-7045256,7045342-7045422,7045509-7045654,
           7046030-7046099
          Length = 207

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 209 KPSRNWCVS---IPGLHRSARQGFNVV*AF 129
           K ++ WC S   IP    SA++GFNV  AF
Sbjct: 140 KKAKAWCASKGNIPYFETSAKEGFNVEAAF 169


>03_04_0205 - 18485933-18488446
          Length = 837

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 43  AKHYFTMFLLVSLMALAASKSLF-EKSCPENAHTTLNPWRADLCRP 177
           A+H F   +    +   A  S + E  CPENA    +  R   C+P
Sbjct: 216 AEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKP 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,112,254
Number of Sequences: 37544
Number of extensions: 313561
Number of successful extensions: 714
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)