Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_O07
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe... 118 1e-27
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ... 38 0.002
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 28 1.7
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M... 27 2.3
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 7.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 7.0
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual 25 9.2
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 25 9.2
>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 233
Score = 118 bits (283), Expect = 1e-27
Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 1/206 (0%)
Frame = +1
Query: 145 NPNEXTEWNDTLRKMGIIPQKEAEFSEADIVNMIEDT-IQQKEAEKQKQXXXXXXXXXXX 321
NP+E TEWND LR GI+P+KE D+ ++++D + K+ + +
Sbjct: 2 NPDEDTEWNDILRSKGILPEKEP-----DVDDVLDDALVDAKQLAHENRLENKDLDELAE 56
Query: 322 XXXXXXXAVIEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYK 501
++ YR KR+ E K K +FG V +S +Y EV A ++++VV+H+++
Sbjct: 57 LEDEEDDEFLQMYRNKRMQEWKDQMSKAKFGSVYPISKPEYTAEVTDASKEVFVVVHMFQ 116
Query: 502 QGIQQCALINQHLRELAVKFPYTKFLKAIAQTCIPNFPERNLPSLFVYFEGEMKQQFVGS 681
+ C L+ L LA +P KF+K + + N+PE +P+L +Y G+++QQ +
Sbjct: 117 DSLPACKLLAAILERLAPMYPQIKFVKIPGKQAVENYPEAMMPTLLIYGHGDLQQQILTL 176
Query: 682 HELRGTSLTCDELEYILGKVGAVETS 759
L G + + ++ L + GA++ S
Sbjct: 177 ATLGGMNTSVVDVAEALVRAGALKDS 202
>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 279
Score = 37.5 bits (83), Expect = 0.002
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
Frame = +1
Query: 355 EYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQ 534
E +K A ++ EK + V + V + + + VVIH Y +C +I+
Sbjct: 117 EMLKKEFARVEAAKEKGHM-QFLTVENEREVMDFTLSSKK--VVIHFYHPDFIRCKIIDS 173
Query: 535 HLRELAVKFPYTKFLK---AIAQTCIPNFPERNLPSLFVYFEGEMKQQFVGSHEL-RGTS 702
HL ++A TKF++ A A + + LP++ Y ++ + +G +L
Sbjct: 174 HLEKIAKVHWETKFIRIEAANAPFLVVKLGLKVLPAVLCYVNSQLVDKIIGFADLGNKDD 233
Query: 703 LTCDELEYILGKVGAVE 753
LE+ L K A++
Sbjct: 234 FETSLLEFRLLKSSAID 250
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 562 PYTKFLKAIAQTCIPNFPERNLPSL 636
P K + ++C+PN PE+ PSL
Sbjct: 237 PMETLKKYVLESCVPNMPEKLRPSL 261
>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 214
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 343 AVIEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYV 447
+ +EE+RR EI K K FG E SG DY+
Sbjct: 72 STLEEWRRHLKEEIGKSDRKALFGNRDETSG-DYI 105
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 220 KTPLLSAV*YPSFEGYRSILXLHWGSAFY 134
KTPLL P F YR + + W S FY
Sbjct: 296 KTPLLDL---PPFMRYRHLSDVEWKSCFY 321
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 432 WSRLCAGG*QGWSRHLGGHSFVQTGNTTMCTNKSTSTRISSQVS 563
+ L GG WS +L G+ +QT ++ + +TS+ SS S
Sbjct: 102 YGSLMCGGDLYWSVYLTGNGVLQTTVSSSSVSSTTSSSSSSSPS 145
>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 193 IIPQKEAEFSEADIV 237
IIP+K+A+FSE D+V
Sbjct: 100 IIPRKKADFSENDLV 114
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.2
Identities = 21/116 (18%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = +1
Query: 424 EVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLKAIAQ--T 597
E++ + QE+ + G++ ++++ Y C +NQ + A FLK A+ +
Sbjct: 4 EITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFS 63
Query: 598 CIPNFPERNLPSLFVYFEG-EMKQQFVGSHELRGTSLTCDELEYILGKVGAVETSI 762
I + N LFV G ++ + G++ + + + ++ ++ ++ + S+
Sbjct: 64 DIAESFDVNAVPLFVLIHGAKVLARISGANPQKLKAAIDEYIQPLISQISSTNASV 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,090
Number of Sequences: 5004
Number of extensions: 63278
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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