Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_O07
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0604 - 4493868-4494028,4494538-4494746,4495860-4496003,449... 134 6e-32
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877... 31 1.0
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 29 5.5
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 5.5
03_05_1105 + 30438140-30438350,30438448-30438926 28 7.2
12_02_0127 + 13961726-13961947,13962050-13962121,13962288-139630... 28 9.6
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357... 28 9.6
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553... 28 9.6
02_02_0068 + 6536756-6537253 28 9.6
>01_01_0604 -
4493868-4494028,4494538-4494746,4495860-4496003,
4496298-4496539
Length = 251
Score = 134 bits (325), Expect = 6e-32
Identities = 65/191 (34%), Positives = 105/191 (54%)
Frame = +1
Query: 160 TEWNDTLRKMGIIPQKEAEFSEADIVNMIEDTIQQKEAEKQKQXXXXXXXXXXXXXXXXX 339
TEW+D R++G +P K F ++ Q K E +
Sbjct: 16 TEWDDIQRRLGNLPPKPEPFKPPAYAPKVDADEQPKSKEWLDEREPDELEDLEDDLDDDR 75
Query: 340 XAVIEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQC 519
+E+YRR RLAE+++ ++ +FG + ++G D+V+EV++A D+WVV+ LYK GI +C
Sbjct: 76 F--LEQYRRMRLAELREAAKAAKFGSIVPITGSDFVREVSQAPSDVWVVVFLYKDGIPEC 133
Query: 520 ALINQHLRELAVKFPYTKFLKAIAQTCIPNFPERNLPSLFVYFEGEMKQQFVGSHELRGT 699
L+ L ELA ++P TKF+K I+ CIPN+P+RN+P++ VY +K +VG + G
Sbjct: 134 GLLQTCLDELATRYPATKFVKIISTDCIPNYPDRNVPTILVYNNSAVKGTYVGLQKFGGK 193
Query: 700 SLTCDELEYIL 732
T + + L
Sbjct: 194 RCTPESVALAL 204
>04_04_0158 -
23187070-23187264,23187347-23187477,23187550-23187763,
23187834-23187932,23188034-23188156,23188247-23188366,
23188447-23188506,23188592-23188884,23189554-23189707,
23189813-23190130,23190668-23190798,23191001-23191586,
23192125-23192739
Length = 1012
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +1
Query: 343 AVIEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCA 522
A+ E+ + ++L E ++S +P E REV ++ + K G + + L ++G+
Sbjct: 551 AIAEKEKTEKLIEELEMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGT 610
Query: 523 LINQHL 540
+ N HL
Sbjct: 611 VENMHL 616
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 776 RGSXVMLVSTAPTLPSMYSSSSQVKLVPLSSWDPTN 669
+G + L+ + +PS+ SS ++ S W+PTN
Sbjct: 722 KGRFIFLIDSRACVPSIKLSSVDAIIIYCSDWNPTN 757
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +1
Query: 412 GEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLKA-I 588
GEV ++G + Q VIH QQC I+ + L ++P FLK I
Sbjct: 568 GEVEAITGMEQFQMATSLPGVS--VIHFMTPLNQQCCKISPFVNTLCTRYPSISFLKVDI 625
Query: 589 AQTCIPNFPE--RNLPSLFVYFEGEMKQQFV 675
+++ E R +P+ +Y G ++ +
Sbjct: 626 SESPAVARAENVRTVPTFKIYKNGTRVKEMI 656
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 292 IIVFVFQLPFAVLCPLSCSQYRPPKTPLLSAV 197
+ +F+ LPF VLCPL R P LL A+
Sbjct: 60 LYIFLIILPFIVLCPLYYYYQRHPVNLLLLAL 91
>12_02_0127 +
13961726-13961947,13962050-13962121,13962288-13963058,
13963401-13963573,13963973-13964083,13964114-13964460,
13964627-13964652
Length = 573
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 718 VHHKSNWCPLVRGTPQT 668
V+ KSNWCPL++ T ++
Sbjct: 428 VYFKSNWCPLIQTTARS 444
>06_03_0498 -
21432958-21434245,21434579-21435310,21435502-21435788,
21435955-21436026,21436130-21436264,21436887-21436925
Length = 850
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 718 VHHKSNWCPLVRGTPQT 668
V+ KSNWCPL++ T ++
Sbjct: 485 VYFKSNWCPLIQTTARS 501
>05_02_0004 -
5528713-5528718,5529039-5529390,5529802-5530339,
5530354-5531731,5531895-5532015,5534226-5534545
Length = 904
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 718 VHHKSNWCPLVRGTPQT 668
V+ KSNWCPL++ T ++
Sbjct: 720 VYFKSNWCPLIQTTARS 736
>02_02_0068 + 6536756-6537253
Length = 165
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 116 ILIVNLIKCRTPMKXQNGTIPFERWVLYRRKKRSFRRP 229
++ ++C P + +G++ WV RR + RRP
Sbjct: 56 VMDARCVRCGDPARCDSGSVVARSWVFRRRARCCRRRP 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,604,603
Number of Sequences: 37544
Number of extensions: 382957
Number of successful extensions: 984
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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