Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O07
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016679-2|AAB66159.1|  658|Caenorhabditis elegans Hypothetical ...    29   4.9  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    29   4.9  
Z69383-3|CAA93409.1|  261|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AF016679-2|AAB66159.1|  658|Caenorhabditis elegans Hypothetical
           protein T28C12.4a protein.
          Length = 658

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +2

Query: 257 YSKRKLKNKNNYLS*TLMDWTNLKIQKMRLL*KSTAGND*QKLRSCLRSLDSEKCEKSLV 436
           ++K KLK + NY     M    L I+K R+   S   N    + +C  +L S K E ++V
Sbjct: 43  FTKLKLKPRKNYRCKFKMPQLLLPIKKARVRTSSNQSN----MGTCFSNLKSGKSENAIV 98

Query: 437 KI 442
           ++
Sbjct: 99  RV 100


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 352 EEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQE 453
           E+  R+RLAEIK+L E  R  + R ++     Q+
Sbjct: 241 EQMERERLAEIKRLEEAARLEDERRIAADIEAQK 274


>Z69383-3|CAA93409.1|  261|Caenorhabditis elegans Hypothetical
           protein F13E9.6 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 358 YRRKRLAEIK--KLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVV 486
           YR+  +   K  K   K + G+  EV   + +Q++NK+G+  W++
Sbjct: 30  YRKPEIGNQKRVKFEVKTKVGKKYEVRTLEILQKLNKSGKQEWIL 74


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +1

Query: 427 VSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLKAI 588
           ++  D +   + +GQDI++V+ L +  +      NQ L E   ++ + + LK +
Sbjct: 104 INSTDVLMRESGSGQDIYIVMDLMETDLLSVLKSNQTLNEKHFQYFFYQILKGL 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,269,910
Number of Sequences: 27780
Number of extensions: 351523
Number of successful extensions: 961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)