Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O05
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   2.0  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    27   2.6  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   6.0  
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.0  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.0  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    26   6.0  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   7.9  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    25   7.9  

>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -2

Query: 616 ALACTVGSMCVGASVDLASSDFGVVASSFLASVDEXVSLFLAASVWCSGTILVG 455
           A + +V S  +G S+   SS FG ++   L+S    VSL      W SGT L G
Sbjct: 91  AWSSSVPSKMLGVSLAAISSSFGEISFLHLSSRYHSVSL----PCWSSGTGLAG 140


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 486 EAAKKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEP 599
           E   K ++ SSTE+++E  ++  +E+ +  E  TH+EP
Sbjct: 79  EPVLKIKSVSSTESEEEKESS--TEIGEKQEKETHLEP 114


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 451 LNQLKLYQNTRQKLLKKVK 507
           LNQ+  YQ  R KLLK VK
Sbjct: 843 LNQVNYYQFIRNKLLKDVK 861


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 495 KKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEPTVQ 608
           K  +T S    K+ED++T +SEL   +  P  +  +++
Sbjct: 21  KSRQTPSEFTKKEEDSSTKESELQTRSSPPLPVNTSLE 58


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 516 STEAKKEDATTPKSELAKSTEAPTHIEPTVQ 608
           S +  K+D TTPK  L + T +P      +Q
Sbjct: 179 SPKKSKDDITTPKKRLMEDTYSPRESPSKIQ 209


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 619 NALACTVGSMCVGASVDLASSDFGVVASSFLASVDEXVSLFLAASVWCSGTI 464
           N L+ +V ++   A VDL+  D+GVV+ S    V +     L  S  CS T+
Sbjct: 236 NPLSSSVATIIHDAYVDLSIWDYGVVSPSSYNLVMDVHRYQLYESDECSKTL 287


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 480 QTEAAKKSETXSSTEAKKEDATTPKSELAKSTEAPTHIE-PTVQARAF 620
           + +   K  +   T+ K  D  TPK +   STE    +   T++A+ F
Sbjct: 11  KAQKLSKEPSVELTDTKSSDNVTPKQKSPNSTEEDVSLNLKTLKAKKF 58


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 447 VSEPTKIVPEHQTEAAKKSETXSSTEAKKEDATTPKSELAKS 572
           + E  + V EH   A K++E   +T      A +P+S + K+
Sbjct: 441 IEEEAEHVAEHPDLAKKQTEENKATSKPAVSAKSPESNIPKN 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,451
Number of Sequences: 5004
Number of extensions: 36791
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)