Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_O05
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0719 + 22500217-22500395,22500506-22500551,22500671-225007... 32 0.50
05_03_0033 - 7585267-7586028 31 0.88
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 29 2.7
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 29 3.5
05_03_0035 - 7592177-7592938 29 4.7
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911... 29 4.7
06_03_1248 + 28685911-28687719 28 8.2
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 28 8.2
03_05_0883 + 28483429-28484385,28485090-28485398 28 8.2
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053... 28 8.2
>12_02_0719 +
22500217-22500395,22500506-22500551,22500671-22500745,
22500846-22500932,22501077-22501148,22501267-22501338,
22501448-22501519,22501644-22502510
Length = 489
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +3
Query: 444 PVSEPTKIVPEHQTEAAKKSETXSSTEAKKEDAT----TPKSELAKSTEAPTHIE 596
PV+E T++ P +TE + +ET A++ D T T + +LA+ TE + E
Sbjct: 292 PVAETTEVKPAEETETSTVAETLQVKPAEETDTTSMAETAELKLAEETETASMAE 346
>05_03_0033 - 7585267-7586028
Length = 253
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 444 PVSEP---TKIVPEHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTEA 581
P SEP TK P+ + ++ KSE TE K E PK+E ++A
Sbjct: 155 PQSEPNPETKAEPKSEPKSEPKSEPTPQTEPKAESQPEPKTEPKSESKA 203
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 340 DADTGVASVTFXASGFTFLSSVLVSTAEVVF 248
DAD GVA+V G F S V ++ AE VF
Sbjct: 53 DADDGVAAVVLAGRGRAFCSGVDLTAAEEVF 83
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 450 SEPTKIVPEHQTEAAKKSETXSSTEAKKEDATTPKSE 560
SEPT VP+H E A +SE +KE+ P+++
Sbjct: 812 SEPT--VPDHTDEEAGESEADEDAPGEKEEIIDPEAD 846
>05_03_0035 - 7592177-7592938
Length = 253
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 444 PVSEP---TKIVPEHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTEA 581
P SEP TK P+ + + KSE TE + E PK+E ++A
Sbjct: 155 PQSEPNPETKAEPKSEPKYEPKSEPTPQTEPRAESQPEPKTEPKSESKA 203
>01_06_1171 -
35089719-35090336,35090596-35090715,35090851-35091108,
35091934-35092563
Length = 541
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 598 GSMCVGASVDLASSDFGVVASSFLASVDEXVSLFLAASVWCSGTILVGSETG 443
G CVG + + S+ V A++ E L ++VWC G +L+ TG
Sbjct: 319 GYGCVGFNTEEEISNASVAAANLSVETLEKGVLTPKSNVWCFGVVLLELITG 370
>06_03_1248 + 28685911-28687719
Length = 602
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +3
Query: 471 PEHQTEAAKKSETXSSTEAKKEDATTPKSE-----LAKSTEAPTHIEPT 602
P + AAK + T +ST A ++ A TP + +A ++ PT +PT
Sbjct: 171 PAATSAAAKDAATPASTSAVRKKAATPATSAAGKAVAGASPGPTRAQPT 219
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 450 SEPTKIVPEHQTEAAKKSETXSSTEAKKEDAT-TPKSELAKSTEAPTHIEPT 602
S P PE TEAA + +S + +K+D T T ++ AKS+ + P+
Sbjct: 395 SSPPAEPPETATEAAGSAVRPASIKLEKDDTTGTSPADTAKSSSSNRSPHPS 446
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 682 MNPIAKRPRVRMIPPTKLGPSNALACTVGSMCVGASVDLASSDFGVVASS 533
++ + +RPR P G +A A TV + A DL + + G+V +
Sbjct: 92 LHGLKRRPRTPRTKPGGGGKHDASAATVAAAAASAVPDLEAEESGIVGDT 141
>02_05_0331 +
28003454-28003912,28004649-28004873,28005017-28005370,
28005673-28005702,28006869-28007342
Length = 513
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 673 IAKRPRVRMIPPTKLGPSNALACTVGSMCVGASVDLASSDFGVVA 539
++ P R P + + +L G++CVGA+ L D G A
Sbjct: 76 VSASPHPRAPPVPRRALAASLLAAAGALCVGAAASLVPEDSGWAA 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,427,244
Number of Sequences: 37544
Number of extensions: 231445
Number of successful extensions: 773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -