Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_O05
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical ... 31 0.60
Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 30 1.4
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 30 1.4
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 30 1.4
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 30 1.8
Z82288-5|CAB05324.1| 380|Caenorhabditis elegans Hypothetical pr... 29 3.2
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 28 5.6
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 28 5.6
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 28 5.6
AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein. 28 5.6
AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical ... 28 5.6
AF100660-1|AAC68970.2| 442|Caenorhabditis elegans Hypothetical ... 28 7.4
Z93388-12|CAB07661.2| 294|Caenorhabditis elegans Hypothetical p... 27 9.8
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 27 9.8
U97017-3|AAB52360.1| 199|Caenorhabditis elegans Hypothetical pr... 27 9.8
U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical pr... 27 9.8
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 27 9.8
AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical ... 27 9.8
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 27 9.8
>AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical
protein F09G2.9 protein.
Length = 415
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +3
Query: 447 VSEPTKIVPEHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEPTVQA 611
V E K VPE KK E +S+E KK++ E + EAP E + A
Sbjct: 153 VVEEKKEVPETPVVEDKKEEAPASSEEKKDEPVVNTEEKKDAAEAPAADEESEAA 207
>Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical
protein F36A2.9b protein.
Length = 565
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 447 VSEPTKIVPEHQTEAAKKSETXSSTEAKKEDATTP 551
V EP K + E Q E K T +T A+ E ATTP
Sbjct: 504 VEEPQKKLEEAQKEEQKALLTRQNTRAQSEQATTP 538
>Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical
protein F36A2.9a protein.
Length = 528
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 447 VSEPTKIVPEHQTEAAKKSETXSSTEAKKEDATTP 551
V EP K + E Q E K T +T A+ E ATTP
Sbjct: 467 VEEPQKKLEEAQKEEQKALLTRQNTRAQSEQATTP 501
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical protein
T06D8.1b protein.
Length = 3653
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1092 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1139
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1169 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1216
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEPTVQARAFD 623
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ E T A A +
Sbjct: 1323 SIPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEES----EETTTAAATE 1378
Query: 624 GPS 632
S
Sbjct: 1379 ASS 1381
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1092 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1139
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1169 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1216
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEPTVQARAFD 623
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ E T A A +
Sbjct: 1323 SIPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEES----EETTTAAATE 1378
Query: 624 GPS 632
S
Sbjct: 1379 ASS 1381
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1092 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1139
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1169 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1216
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEPTVQARAFD 623
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ E T A A +
Sbjct: 1323 SIPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEES----EETTTAAATE 1378
Query: 624 GPS 632
S
Sbjct: 1379 ASS 1381
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1092 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1139
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1169 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1216
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEPTVQARAFD 623
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ E T A A +
Sbjct: 1323 SIPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEES----EETTTAAATE 1378
Query: 624 GPS 632
S
Sbjct: 1379 ASS 1381
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1092 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1139
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1169 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1216
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEPTVQARAFD 623
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ E T A A +
Sbjct: 1323 SIPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEES----EETTTAAATE 1378
Query: 624 GPS 632
S
Sbjct: 1379 ASS 1381
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1092 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1139
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPT 587
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ T
Sbjct: 1169 SVPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEESTT 1216
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 450 SEPTKIVPEHQ-TEAA-KKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEPTVQARAFD 623
S PT++ + Q TEA+ +++ T ++TEA E+ TTP A E+ E T A A +
Sbjct: 1323 SIPTELSKDDQVTEASGEETTTAAATEASSEETTTPAVTEASGEES----EETTTAAATE 1378
Query: 624 GPS 632
S
Sbjct: 1379 ASS 1381
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 453 EPTKIVPEHQTEAAKKSETXSST-EAKKEDATTPKSELAKSTEAPTHIEPT 602
EPT +H+TE A +E ++T E+ + T E A + PT PT
Sbjct: 525 EPTTTTGQHKTEKAITTEEPTTTEESSTTEEVTTTEEPANTGNPPTTENPT 575
>Z82288-5|CAB05324.1| 380|Caenorhabditis elegans Hypothetical
protein ZK896.7 protein.
Length = 380
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 456 PTKIVPEHQTEAAKKSETX-SSTEAKKEDATTPKSELAKSTEAPTHIEPTVQARA 617
PT I P T A + T +T+ TTPK ST T + PT +A
Sbjct: 156 PTTIPPTTTTTRAPTTTTVRKTTQTTATTMTTPKPTTTVSTTTTTTVPPTTTPKA 210
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 453 EPTKIVPEHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTE 578
EP + E QTE K SE S T+ + ++EL S+E
Sbjct: 1120 EPLLVSDESQTEQTKSSEIDSQTDPPSTKSFICQTELITSSE 1161
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 453 EPTKIVPEHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTE 578
EP + E QTE K SE S T+ + ++EL S+E
Sbjct: 1120 EPLLVSDESQTEQTKSSEIDSQTDPPSTKSFICQTELITSSE 1161
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 453 EPTKIVPEHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTE 578
EP + E QTE K SE S T+ + ++EL S+E
Sbjct: 1120 EPLLVSDESQTEQTKSSEIDSQTDPPSTKSFICQTELITSSE 1161
>AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein.
Length = 167
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 450 SEPTKIVPEHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEPTVQARAFDG 626
S+ + + P+ + S+ E++ TP S A STE PT PTV + DG
Sbjct: 74 SKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTE-PT---PTVPDKVDDG 128
>AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical
protein T06A4.2 protein.
Length = 167
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 450 SEPTKIVPEHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEPTVQARAFDG 626
S+ + + P+ + S+ E++ TP S A STE PT PTV + DG
Sbjct: 74 SKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTE-PT---PTVPDKVDDG 128
>AF100660-1|AAC68970.2| 442|Caenorhabditis elegans Hypothetical
protein H35B03.1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 598 GSMCVGASVDLASSDFGVVASSFLASVDEXVSLFLAASVW 479
G++ VG DL ++ FLA+V++ +SLF+ W
Sbjct: 36 GNIVVGVE-DLRDANLRFAVRYFLANVEKSISLFIVKQEW 74
>Z93388-12|CAB07661.2| 294|Caenorhabditis elegans Hypothetical
protein T10C6.4 protein.
Length = 294
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 233 NCCCVFFRFTWSLRDIMRNGYCSSQL 156
NC FF+F W + RN C ++L
Sbjct: 136 NCSFPFFQFGWVFMEAQRNETCGAKL 161
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 474 EHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTE 578
E + E KK E E KKED KSE + E
Sbjct: 338 EKKDEEPKKEEEKKEEEEKKEDEVEEKSEKVEEKE 372
>U97017-3|AAB52360.1| 199|Caenorhabditis elegans Hypothetical
protein F47B3.5 protein.
Length = 199
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 450 SEPTKIVPEHQTEAAKKSETXSSTEAKKEDATTP 551
+E +K E +KKSE S + KKEDA P
Sbjct: 22 NEGSKKEESKDKEKSKKSEDKKSEDPKKEDAKKP 55
>U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical
protein F47B3.4 protein.
Length = 281
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 450 SEPTKIVPEHQTEAAKKSETXSSTEAKKEDATTP 551
+E +K E +KKSE S + KKEDA P
Sbjct: 104 NEGSKKEESKDKEKSKKSEDKKSEDPKKEDAKKP 137
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 474 EHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEP---TVQARAFDGPS 632
E Q + K + TE A+TP ++ K+ P H+ P ++Q+ A P+
Sbjct: 440 ECQDKKTKSPIKGARTERPSSSASTPDAKYQKNHRYPVHLSPLSASLQSLAISSPT 495
>AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical
protein T06A4.1b protein.
Length = 606
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 453 EPTKIVPEHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEPT 602
EP + + TEA E ++T +E TT +E + TEAPT PT
Sbjct: 472 EPVDEITQKPTEAPTTEEPTTTT--TEEPTTTTTTE--EPTEAPTEPSPT 517
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 474 EHQTEAAKKSETXSSTEAKKEDATTPKSELAKSTEAPTHIEP---TVQARAFDGPS 632
E Q + K + TE A+TP ++ K+ P H+ P ++Q+ A P+
Sbjct: 441 ECQDKKTKSPIKGARTERPSSSASTPDAKYQKNHRYPVHLSPLSASLQSLAISSPT 496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,738,512
Number of Sequences: 27780
Number of extensions: 215298
Number of successful extensions: 975
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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