Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O04
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    28   1.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.1  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   4.8  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.8  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    26   6.3  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   8.4  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 384 PSTRLSKSPMPTLHP-TKKKSMQPRPYCRMTR*PWKTSMMPILTW--PLIPSRSQPSGH- 551
           P +    SP P L P ++  S++ +     ++       +PI T   PLIPS SQ S H 
Sbjct: 42  PVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHW 101

Query: 552 TLRKSS 569
           T+R  S
Sbjct: 102 TIRHES 107


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +2

Query: 404 ESNANIASYQKEINATKALLPYDQMTMEDFYDAH----PDLALDPIKKPTFWPHTPEEQL 571
           E +A I  ++        + PYD + +ED +++     P++ LDP     F  + PEE  
Sbjct: 661 EDSAIIGPWKSGTTLRNLIYPYDTIELEDSWNSSWGCIPNIELDPY---AFKLYVPEEDF 717

Query: 572 DYVDP 586
              DP
Sbjct: 718 IENDP 722


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 480 PWKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQRNKLSL 605
           P  T+  P+ + PL+   S P  +  + S S + +QRN L L
Sbjct: 47  PRTTARTPLASSPLLFESSSPGPNIPQSSRSHLLSQRNDLFL 88


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 171 LLSK*NPIIISEGY*PIHLNRPXLTGLCTNRLYLFL 278
           LL   NPI  S      HLN+  +T LC N    FL
Sbjct: 259 LLVNLNPIYFSTARRFEHLNKSLITTLCLNNYLSFL 294


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 540 PSGHTLRKSSSTMSTQRNKLSLLQLQLHTNIVKVLLA 650
           PS   L+KS +T ST+     L QLQ     +++LLA
Sbjct: 406 PSHSLLQKSKNTSSTKALTSHLEQLQQENQQLRMLLA 442


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = +2

Query: 365 WNQVKNAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTF 544
           + Q K A     Q+       YQ+++ + +ALL       +   +AHP +   P   P+ 
Sbjct: 114 FQQEKEAAMQQQQQQQQQQQLYQRQMQSREALLSQQIPPNQIGINAHPAVRQTPQPAPS- 172

Query: 545 WPHTPEEQLDYVDP 586
            P+TP    + + P
Sbjct: 173 -PNTPSGNANQLTP 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,902
Number of Sequences: 5004
Number of extensions: 59589
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)