Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O04
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical pr...    63   2e-10
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    29   3.4  
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi...    29   3.4  
Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U46753-6|AAO21474.1|  740|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U46753-5|ABB88235.1|  803|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U46753-4|AAO21475.1|  764|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U23526-5|AAB36850.1|  391|Caenorhabditis elegans Acyltransferase...    28   7.9  
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    28   7.9  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    28   7.9  

>Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical
           protein C06H2.1 protein.
          Length = 191

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
 Frame = +2

Query: 92  AQXXSQSAVNWAALAXRVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKXNWAVYKQAVP 271
           A+  + S+VNW+ LA R+  E  A L   K  S  +   V   P + PK ++A  K+A+P
Sbjct: 5   AKRVATSSVNWSKLAERLVPEHAAELTRVKGVSGTFQSAVSQLPADLPKIDFAALKKALP 64

Query: 272 IPGMV-DTFQKQYEALKIPYPADTQTALVE-SQWNQVKNAIDAFIQESNANIASYQKEIN 445
               V D+ QKQYE++KIPY       L E  QW    NA     +   A+     K++ 
Sbjct: 65  AHSAVLDSLQKQYESVKIPYGEVPAEYLKEVDQWVDYNNARIKLHEVKVADGLQEAKKVE 124

Query: 446 ATKALLP----YDQMTMEDFYDAH 505
              A  P    +D+    +++ AH
Sbjct: 125 EKWAKAPPVEHFDRQHFVEYFPAH 148


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 416 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 583
           N+ S ++   A K +     + ME+ +  HP+  +D + KP         QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270


>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 2 protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 416 NIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 583
           N+ S ++   A K +     + ME+ +  HP+  +D + KP         QL YVD
Sbjct: 216 NVPSEEQVARARK-ITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270


>Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical
           protein F25H8.6 protein.
          Length = 599

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/85 (20%), Positives = 39/85 (45%)
 Frame = +2

Query: 260 QAVPIPGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKE 439
           Q +  PG+   F+       +P     Q  +V    NQ+K  I+A +  S++  +   + 
Sbjct: 375 QIIDRPGIRSLFKFVLPEYHMPSGDVFQATIVPQLLNQMKQQIEALVHNSSSLSSIPDQV 434

Query: 440 INATKALLPYDQMTMEDFYDAHPDL 514
           + ++ A   Y+ +++ +   A P++
Sbjct: 435 MTSSSATSSYEDVSVNESQMAGPNV 459


>U46753-6|AAO21474.1|  740|Caenorhabditis elegans Hypothetical
           protein C34F11.3a protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 161 AHLAAFKIKSDNYLRRVLANPPEPPKXNW 247
           A+L   ++K+     +   NPP+PPK +W
Sbjct: 159 ANLPKHRVKNTETTVQTSFNPPDPPKDHW 187


>U46753-5|ABB88235.1|  803|Caenorhabditis elegans Hypothetical
           protein C34F11.3c protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 161 AHLAAFKIKSDNYLRRVLANPPEPPKXNW 247
           A+L   ++K+     +   NPP+PPK +W
Sbjct: 222 ANLPKHRVKNTETTVQTSFNPPDPPKDHW 250


>U46753-4|AAO21475.1|  764|Caenorhabditis elegans Hypothetical
           protein C34F11.3b protein.
          Length = 764

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 161 AHLAAFKIKSDNYLRRVLANPPEPPKXNW 247
           A+L   ++K+     +   NPP+PPK +W
Sbjct: 183 ANLPKHRVKNTETTVQTSFNPPDPPKDHW 211


>U23526-5|AAB36850.1|  391|Caenorhabditis elegans
           Acyltransferase-like protein 12 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 347 ALVESQWNQVKNAIDAFIQESNANIASYQKE 439
           A+V + WN V   + A + E   N+A Y +E
Sbjct: 86  AMVNAHWNAVSVFVGATVTEYGTNLAGYAEE 116


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 152 EQKAHLAAFKIKSDNYLRRVLANPPEPPKXNWAVYKQAVPIPGMVD 289
           E K+   A+  ++D +  R  ANP  PPK   A  K+  P+P   D
Sbjct: 170 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 213


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 152 EQKAHLAAFKIKSDNYLRRVLANPPEPPKXNWAVYKQAVPIPGMVD 289
           E K+   A+  ++D +  R  ANP  PPK   A  K+  P+P   D
Sbjct: 367 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,185,560
Number of Sequences: 27780
Number of extensions: 349848
Number of successful extensions: 984
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)