Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O03
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    28   1.1  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    27   3.3  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    27   3.3  

>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 356 MFFGPALRQGKLLKPCPHPPDDYKLVNM---TVPPAAIPSSFP 475
           MF  P       + P P P D +   +    T+PP A+P+S P
Sbjct: 460 MFPAPFSPPRNAMMPIPAPMDQFSTFHQSMATLPPGAVPTSIP 502


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 141 YDTCGCSTAKYFIFSSIFVPIHK*ASHNANTKQPFILKGGLIVI 10
           Y TC  S     I SS+ +P        A   + F+L+ G++++
Sbjct: 266 YSTCTISAVLLLIVSSVCIPFWTFERTLAKLAKVFLLQSGIVLV 309


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 141 YDTCGCSTAKYFIFSSIFVPIHK*ASHNANTKQPFILKGGLIVI 10
           Y TC  S     I SS+ +P        A   + F+L+ G++++
Sbjct: 233 YSTCTISAVLLLIVSSVCIPFWTFERTLAKLAKVFLLQSGIVLV 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,563
Number of Sequences: 5004
Number of extensions: 56600
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)