Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_O03
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0861 - 25486801-25486997,25487334-25487904,25488874-254889...    31   0.85 
02_04_0596 + 24195863-24196179,24196257-24196359                       30   1.5  
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805...    30   2.0  
11_02_0045 - 7705728-7707581                                           28   6.0  
01_01_0996 - 7879154-7880117,7881280-7881395                           28   6.0  
11_01_0529 - 4158926-4158993,4160010-4160076                           28   7.9  
05_05_0062 + 22039410-22039985,22041467-22041555,22041638-220417...    28   7.9  
02_01_0665 + 4944756-4945151,4946758-4947259,4947909-4947979,494...    28   7.9  

>06_03_0861 -
           25486801-25486997,25487334-25487904,25488874-25488976,
           25489281-25489376,25490319-25490449
          Length = 365

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 304 AHLCRDALPLVRPDIQGYVFWTGFKARE-ITQALSTSTRRLQAC 432
           ++LC +  PL  PD   Y FW  F   E + +  + ST  LQ C
Sbjct: 318 SYLCNEKNPLTCPDADKYFFWDSFHPTEKVNRFFANST--LQIC 359


>02_04_0596 + 24195863-24196179,24196257-24196359
          Length = 139

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 356 YP*ISGRTKGNASRQRCACTCC 291
           +P ++G T   A R+ CACTCC
Sbjct: 53  WPLVAGMTDVMAVREPCACTCC 74


>02_05_1337 -
           35780076-35780290,35780377-35780408,35780490-35780584,
           35780670-35780743,35780851-35780986,35781072-35781135,
           35781333-35781395,35781514-35781656,35781752-35781889,
           35781973-35782094,35782210-35782375,35782647-35782652,
           35782988-35783059,35783241-35783348,35783719-35783848,
           35783964-35784070,35784896-35785005,35785302-35785435,
           35785528-35785982,35786068-35786595
          Length = 965

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +2

Query: 371 ALRQGKLLKPCPHPPDDYKLVNMTVPPAAIPSS-----FPFRKGR-ILANLTTAKPKHWV 532
           A R  +L +P P PP +  +   T  P  IPSS     FP R G+  +      K  H+ 
Sbjct: 105 APRPSELAQPSPTPPQEQPVDAATTTPHHIPSSSKSIRFPLRPGKGTIGTRCMVKANHFF 164

Query: 533 A 535
           A
Sbjct: 165 A 165


>11_02_0045 - 7705728-7707581
          Length = 617

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 278 YEFLSNTYRRTFVEMHYPWCDLIFKDMFFGPALRQGKL 391
           Y    N + +T   + + W     KD FFG  +   KL
Sbjct: 357 YNLFGNEWLQTIYSIRHQWVPAYLKDSFFGEIINAPKL 394


>01_01_0996 - 7879154-7880117,7881280-7881395
          Length = 359

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 433 QHDGPAGCHSIVFSIQKGP 489
           +HDG +G HS +F I KGP
Sbjct: 300 KHDGHSGTHSKLFVIAKGP 318


>11_01_0529 - 4158926-4158993,4160010-4160076
          Length = 44

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 110 YLAVEHPHVSYHNLSYLEV 166
           +LA E P V++HNL +LE+
Sbjct: 20  HLAAEWPKVTWHNLDFLEI 38


>05_05_0062 +
           22039410-22039985,22041467-22041555,22041638-22041770,
           22041864-22042093,22042199-22042675,22042748-22042934,
           22043536-22043574,22043624-22044052
          Length = 719

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 526 LGGLWPHRHGD*GNQSESWYKDPILWCLTQEYH 624
           LGG +    G+   Q E +Y +PI  CL +++H
Sbjct: 534 LGGPYDRLPGESPRQEEYFYSNPIPGCLCRKWH 566


>02_01_0665 +
           4944756-4945151,4946758-4947259,4947909-4947979,
           4948039-4948239
          Length = 389

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +1

Query: 310 LCRDALPLVRPDIQGYVFWTGFKAREITQALSTSTRRLQACQHDG 444
           +C D  PL   D   Y+FW  F   E    +  +   L  C   G
Sbjct: 344 MCNDESPLTCDDASKYLFWDAFHPTEKVNRI-MAQHTLDVCYQQG 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,056
Number of Sequences: 37544
Number of extensions: 387801
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)