Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_N21
(397 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 97 3e-21
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 97 3e-21
U61952-4|AAK84529.1| 267|Caenorhabditis elegans Hypothetical pr... 28 2.8
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a... 28 2.8
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 6.4
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 6.4
L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical pr... 27 6.4
AF036701-1|AAB88368.2| 332|Caenorhabditis elegans Kinase, glh-b... 27 6.4
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 26 8.5
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 26 8.5
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 97.5 bits (232), Expect = 3e-21
Identities = 43/82 (52%), Positives = 55/82 (67%)
Frame = +3
Query: 102 ITVQKVQGKGTLPRXXRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVA 281
+T K + + RRYDRKQ G+GGQ+KPIF IVLR+EC +CK + Q+
Sbjct: 24 VTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLP 83
Query: 282 LKRCKHFELGGDKKRKGQMIQF 347
+KRCKHFELGG KK +GQ+IQF
Sbjct: 84 IKRCKHFELGGQKKSRGQVIQF 105
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 97.5 bits (232), Expect = 3e-21
Identities = 43/82 (52%), Positives = 55/82 (67%)
Frame = +3
Query: 102 ITVQKVQGKGTLPRXXRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVA 281
+T K + + RRYDRKQ G+GGQ+KPIF IVLR+EC +CK + Q+
Sbjct: 24 VTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLP 83
Query: 282 LKRCKHFELGGDKKRKGQMIQF 347
+KRCKHFELGG KK +GQ+IQF
Sbjct: 84 IKRCKHFELGGQKKSRGQVIQF 105
>U61952-4|AAK84529.1| 267|Caenorhabditis elegans Hypothetical
protein F42A9.7 protein.
Length = 267
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +2
Query: 2 GRPMRAERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPR*RHAAQGXK 151
GR ++ R+ K + + +GR++K+ N+TK T S+KS R + + + K
Sbjct: 52 GRSRKSSRSGKS-SRSSKSGRSSKSSNSTKTTGSKSSKSSRSQRSNKSNK 100
>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
assigned gene nameprotein 168 protein.
Length = 1347
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 18 PNELKNGERTKTAQDVLQKM*MPQSTQGITVQKVQGKGTL 137
P+ L+NG R D + + STQG Q G+G++
Sbjct: 1071 PHSLQNGPRNTYGMDQMTQQMSHMSTQGSMAQGSMGQGSM 1110
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 122 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 27
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 122 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 27
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical
protein F44E2.3 protein.
Length = 244
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 237 LRLECADCKVRSQVALKRCKHFELGGDKK 323
+ +E A+CK R + + K+CK E ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180
>AF036701-1|AAB88368.2| 332|Caenorhabditis elegans Kinase,
glh-binding protein 2 protein.
Length = 332
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 125 TLDFLYCDTLCTLWHLHFLQYVLR 54
TL FL +LC + HLH L ++ R
Sbjct: 131 TLSFLVYQSLCAIKHLHNLGFIHR 154
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +3
Query: 6 GRCVPNELKNGERTKTAQDVLQKM 77
GRC N LK G T AQD LQK+
Sbjct: 613 GRCAEN-LKFGRATSGAQDDLQKV 635
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +3
Query: 6 GRCVPNELKNGERTKTAQDVLQKM 77
GRC N LK G T AQD LQK+
Sbjct: 613 GRCAEN-LKFGRATSGAQDDLQKV 635
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,686,304
Number of Sequences: 27780
Number of extensions: 155162
Number of successful extensions: 440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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