Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_N21
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.24 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.24 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   5.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   9.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   9.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.0  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 112 KKSKVKARCPGXXDVMIVNSRVTVVSPNPSSKRRQKPLR 228
           ++S   +R P        N R TVVSP P+ +R  K ++
Sbjct: 878 QESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVK 916


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 112  KKSKVKARCPGXXDVMIVNSRVTVVSPNPSSKRRQKPLR 228
            ++S   +R P        N R TVVSP P+ +R  K ++
Sbjct: 916  QESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVK 954


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 136 SVPLPWTFCTVIPCVLCGIYI 74
           ++PL  +FC V+ C    +Y+
Sbjct: 146 TLPLRLSFCVVLACSTATVYV 166


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 139 GSVPLPWTFCTVIPCVLCGIYIFCS 65
           G++ L  T C VIP +L  +  F S
Sbjct: 219 GTIILKKTVCFVIPIMLLFLAFFVS 243


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 118 SKVKARCPGXXDVMIVNSRVTVVSPNPSSKRR 213
           SK  +  PG  +  I+  +   +SP PS + R
Sbjct: 355 SKANSPFPGSTEADIIELQDLRMSPLPSIRNR 386


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 128 FTLDFLYCDTLCTLWHLHFLQYVL 57
           +T+D LY  T    W LH ++ ++
Sbjct: 265 YTIDRLYELTKIDKWFLHKMKNII 288


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 227 LSGFCLLF 204
           +SGFCLLF
Sbjct: 450 VSGFCLLF 457


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 227 LSGFCLLF 204
           +SGFCLLF
Sbjct: 503 VSGFCLLF 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,091
Number of Sequences: 438
Number of extensions: 1739
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)