Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_N18
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 28 2.0
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 28 2.0
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 3.5
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 3.5
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 27 3.5
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 27 4.6
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 26 6.1
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 6.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 8.1
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 8.1
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 468 WTIGLSSTRTPTRSSEGACSS*EIKTGKTCAQRFHRRS 581
WTI LS T TRS+ +CS+ T T A R +++
Sbjct: 38 WTIALSQHETETRSTRTSCST---TTESTIAMRSKQKA 72
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 242 LFSKHGVKGFT 274
LFSKHGVKGFT
Sbjct: 231 LFSKHGVKGFT 241
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -3
Query: 600 SFILELVNAGESVERMSF 547
SFILE V GESV R SF
Sbjct: 49 SFILESVTQGESVSRYSF 66
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 755 KVDSITEENNQFYAMGKAASTFNFRQLLI 841
KV + E +Q MG AS F FRQL I
Sbjct: 370 KVLTTQSERDQMVEMGLLASNFRFRQLSI 398
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 224 YKQAYSLFSKHGVKGFTPLPFFGNMGR 304
YKQA+SLF +HG G P G++ R
Sbjct: 8 YKQAFSLFDRHGT-GRIPKTSIGDLLR 33
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 4.6
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Frame = +2
Query: 440 ITVKDFEHFLDHRTIINKDTDPFFG--RSLFFLRDQDW----KDM-RSTLS-PAFTSSKM 595
+T++ +H RT +P FG R L+ L + + +D+ R LS PA +
Sbjct: 479 VTIEKRKHTEHIRTYTPNVIEPSFGLGRILYVLMEHAYWTRPEDVNRGVLSFPASIAPIK 538
Query: 596 KLMMPFIVEVG-QQMNKALKQRIQEAGVGY-VDIDSKDLTTRYANDVIASCAFGLKVDSI 769
L++P K L +++ G+ +D + ++ RYA + FGL VD
Sbjct: 539 ALIVPLSRNAEFAPFVKKLSAKLRNLGISNKIDDSNANIGRRYARNDELGTPFGLTVDFE 598
Query: 770 TEEN 781
T +N
Sbjct: 599 TLQN 602
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 704 LTTRYANDVIASCAFGLKVDSITEENNQFYAMGKAA 811
L T +V+ SC FG V E N+F +G A
Sbjct: 65 LATSLDENVVVSCGFGQDVYVWNPETNEFRDLGNNA 100
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 302 RIVIKMDHFSDHIQSLYDSFPEERFVGRYEFLNPMVIIRDIELLK 436
++V +DHF D I S+ +F V + N + IRD L++
Sbjct: 507 KLVAYLDHFGDEILSI--NFDPSNAVTYINYANKVAFIRDPYLIE 549
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 226 VKQHEGGNEHDGPNEENHFSERKNR 152
+++HEG H GP ++ H K++
Sbjct: 347 LEEHEGPEHHRGPEDKEHHKGPKDK 371
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 226 VKQHEGGNEHDGPNEENHFSER 161
V QH G H+GP + +S R
Sbjct: 31 VPQHNGSLAHEGPTNQTDYSSR 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,436,575
Number of Sequences: 5004
Number of extensions: 71883
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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