Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_N17
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical pr... 120 1e-27
Z54236-2|CAE46661.1| 313|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z54236-1|CAA90979.2| 312|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AF321546-1|AAG42102.1| 312|Caenorhabditis elegans suppressor of... 53 2e-07
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical pr... 29 5.8
U50069-2|AAB37558.1| 328|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical ... 28 7.6
>U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical
protein D2096.8 protein.
Length = 316
Score = 120 bits (289), Expect = 1e-27
Identities = 69/199 (34%), Positives = 98/199 (49%)
Frame = +3
Query: 246 EAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGT 425
+ + +LP NV++R+ AL+ LQ + + IE+ FY VH R IV G
Sbjct: 17 DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGE 76
Query: 426 YEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNI 605
EP ++ P + E ++LA KA E DP+ KGI DFW
Sbjct: 77 VEPTKEQIDTPILEGLEGDQLAELY--------------KAAEA--DPSAKGIKDFWLTA 120
Query: 606 FRNVSMLSEMMQEHDEPILKCLQDIKVQMHEXPISFTLEFYFAPNEYFTNTVLTXEYLMK 785
R +++E ++EHD PIL L D+ + P F +EF+FA N YF N VLT YL+
Sbjct: 121 LRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNPYFKNQVLTKTYLLG 180
Query: 786 CKPDEXSPLXFEGPEIYLA 842
PD +PL F+GP + A
Sbjct: 181 FDPDAEAPLQFDGPHVIRA 199
>Z54236-2|CAE46661.1| 313|Caenorhabditis elegans Hypothetical
protein C27B7.1b protein.
Length = 313
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 582 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEXPIS-FTLEFYFAPNEYFTNT 758
I +FW F N +LS + E E +L L+D++VQ E S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 759 VLTXEY 776
V+T Y
Sbjct: 137 VITKSY 142
>Z54236-1|CAA90979.2| 312|Caenorhabditis elegans Hypothetical
protein C27B7.1a protein.
Length = 312
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 582 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEXPIS-FTLEFYFAPNEYFTNT 758
I +FW F N +LS + E E +L L+D++VQ E S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 759 VLTXEY 776
V+T Y
Sbjct: 137 VITKSY 142
>AF321546-1|AAG42102.1| 312|Caenorhabditis elegans suppressor of
presenilin 2 protein.
Length = 312
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 582 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEXPIS-FTLEFYFAPNEYFTNT 758
I +FW F N +LS + E E +L L+D++VQ E S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 759 VLTXEY 776
V+T Y
Sbjct: 137 VITKSY 142
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 359 ECMYFTVKLGLNVDKLLLKSSQGADSPTNI 270
EC++ + K GLNVDK+L +PT I
Sbjct: 188 ECLHISAKSGLNVDKVLEAIIDRVPAPTAI 217
>Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical
protein T14D7.2 protein.
Length = 734
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -2
Query: 482 FFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 312
+ F +I P V T++++ F + + LFI V+ I FA C + LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706
Query: 311 LLKS 300
LL S
Sbjct: 707 LLAS 710
>Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical
protein T14B1.1 protein.
Length = 375
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 453 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 566
+P RD+ EE LA+ ++ A GE+++ + EP D
Sbjct: 6 DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43
>U50069-2|AAB37558.1| 328|Caenorhabditis elegans Hypothetical
protein C09B9.2 protein.
Length = 328
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 787 HFIKYSXVSTVFVKYSFGAK*NSKVKLMGXSCICTLISCKHF 662
HF+ + + F++ SF +K ++ G S + ++ +C HF
Sbjct: 134 HFVLLFLMFSFFLQSSFSSKSRFVEQIFGMSAVSSMSTCAHF 175
>AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical
protein T04D1.2 protein.
Length = 381
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 129 FRMCGRHQNVRRYPYLIFHSPSKFSEK 49
+R +H R+ Y+ FH PSKFS K
Sbjct: 197 YRKVFKHPLFRKCHYVEFHEPSKFSTK 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,854,948
Number of Sequences: 27780
Number of extensions: 382419
Number of successful extensions: 1169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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