Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_N13
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    28   0.86 
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    27   1.5  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   1.5  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   4.6  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   6.1  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   8.0  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   8.0  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   8.0  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    25   8.0  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +2

Query: 71  IVECGHTFVGTSVNRPLVYHHDVQY-SSKMFRKRVENLHFSLPHVPSIFGRSIQG---IL 238
           +  C + F   S  R  +Y H  +  +    +  VENLH ++  + ++ G +++G   IL
Sbjct: 92  LYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHVENLH-TMDEL-NMTGNALKGSRPIL 149

Query: 239 AFDKTYSTA 265
           +FDKT+ TA
Sbjct: 150 SFDKTFDTA 158


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 95  VGTSVNRPLVYHHDVQYSSKMFRKRVENLH-FSLPHVPSIFGRSIQGILAFDKTYSTASA 271
           V  ++N   VY H+   SSK F+K ++ LH F       +  R   G+  ++ ++ T  A
Sbjct: 336 VNAAMNTVCVYFHEGP-SSKAFQKHIQRLHDFMWVQPEGMLMRGTNGLQVWETSF-TLQA 393

Query: 272 NITQG 286
            +  G
Sbjct: 394 LVESG 398


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 214 EYGRYMRQAEMEVFNSLTEHFRAVLH 137
           E G Y+ +     +N + E FR +LH
Sbjct: 260 EIGAYLAEVSTRAYNGVFERFRTILH 285


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 131 HDVQYSSKMFRKRVENLHFSLP 196
           +D+ ++S +FRKR  + +FS P
Sbjct: 309 YDLFFASPVFRKRTSSFYFSQP 330


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 211 YGRYMRQAEMEVFNSLTEHFRAVLHVMV 128
           YGR M+    E  + + +H+RAV   ++
Sbjct: 649 YGRLMQSEHTETSDMMEQHYRAVTQYLL 676


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 170 VENLHFSLPHVPSIFGRSIQGILA 241
           ++NL +SLP V SI   S+ GI++
Sbjct: 107 LQNLGYSLPIVGSISETSVSGIMS 130


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 221 SIQGILAFDKTYSTASANITQGGIGYNFVNLR 316
           SI+GI  +D     A  + T GGIG N  N+R
Sbjct: 227 SIEGI--YDTLKMCAMISKTAGGIGINIHNIR 256


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 157 HFRAVLHVMVVDQGPIDAGADESVTAFHDHRS 62
           H  ++LH  V+D   +  G+  S  AF + RS
Sbjct: 130 HIASLLHDDVIDHANVRRGSPSSNVAFGNRRS 161


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +2

Query: 131 HDVQYSSKMFRKRVENLHFSLPHVPSIFGRS 223
           H +++  K+  K+ + + +++ H+P ++GRS
Sbjct: 161 HFLKHYHKVRAKKYDEVLYAVYHLPLVYGRS 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,134
Number of Sequences: 5004
Number of extensions: 33325
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)