Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_N13
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771...    36   0.013
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637     29   2.6  
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467...    27   6.0  
10_01_0190 + 2107854-2108135,2108215-2109272,2110561-2110681           27   8.0  
08_02_1334 - 26224546-26225337                                         27   8.0  
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783...    27   8.0  

>04_04_1580 -
           34576595-34576723,34576905-34576981,34577058-34577104,
           34577864-34577964,34578114-34578203,34578647-34578763,
           34578835-34578992,34579562-34579843,34580367-34580667
          Length = 433

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 86  HTFVGTSVNRPLVYHH-DVQYSSKMFRKRVENLHFSLPHVPSIF 214
           +T V TS   PL +HH  +Q S + F+ RV + + + PH+PS F
Sbjct: 78  YTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNF 121


>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
          Length = 454

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 211 YGRYMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAF 77
           +GR+   A++ VFN+    +   L   +++ GP DAG + S T +
Sbjct: 256 HGRHWEGADVIVFNTYL-WWCTGLQFRILEDGPFDAGGNSSTTTW 299


>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
            4675953-4676072,4676185-4676313,4676394-4676442,
            4676899-4676970,4677574-4677707,4677798-4677915,
            4678332-4678541,4678630-4678942,4679539-4679632,
            4679854-4679962,4680243-4680514,4680597-4680724,
            4680832-4681066,4681570-4681758,4681845-4682128,
            4682218-4682398,4682486-4682728,4682904-4682986,
            4683119-4683227,4687996-4688091,4688675-4688764,
            4688881-4689129,4689233-4689412,4690179-4690250,
            4691385-4691474,4691605-4691705,4691794-4691959
          Length = 1757

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 184  MEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAFHDHRSGE*Q--HNDLQLHAWQMA 14
            ++   +L+EH  AV  V+  D+  +    D++V  +   +SG+ Q  +   + H W+ A
Sbjct: 1562 LQCVQTLSEHKAAVTSVLCWDEKLLSCSLDKTVKIWAASKSGDLQVIYTHSEEHGWKRA 1620


>10_01_0190 + 2107854-2108135,2108215-2109272,2110561-2110681
          Length = 486

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HEVANRCVATRRCGDRGMRSHF 93
           H+V  R + T  C D  +RSHF
Sbjct: 175 HKVGKRTLVTHVCNDERIRSHF 196


>08_02_1334 - 26224546-26225337
          Length = 263

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 81  AVTLSSAPASIGPWSTTMTCSTARKCSVREL 173
           +VTL+   A++GP  T    + A  C++R+L
Sbjct: 9   SVTLADQLAAVGPAGTAAATAAAGSCNLRDL 39


>05_04_0355 -
           20577189-20577275,20578001-20578129,20578252-20578371,
           20578505-20578741,20578983-20579258,20579375-20579508,
           20580006-20581632
          Length = 869

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 83  GHTFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVP 205
           G   VG S NR +  +H +  S   + K+++NL   L H+P
Sbjct: 829 GRLIVGLS-NREIKKNHGICSSIPFYFKKIDNLIVILDHLP 868


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,518
Number of Sequences: 37544
Number of extensions: 254125
Number of successful extensions: 630
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)