Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_N13
(486 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 27 5.5
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 27 7.2
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 27 7.2
Z78416-8|CAB01683.2| 588|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z69717-4|CAA93533.2| 588|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 9.5
U40419-1|AAA81422.1| 283|Caenorhabditis elegans Hypothetical pr... 27 9.5
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 27 9.5
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 27 9.5
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 27 9.5
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 71 IVECGHTFVGTSVNRPLVYHHDVQYSSKMFRKR 169
++E G V V + + Y +++ + KMFRK+
Sbjct: 2287 VIEIGRLMVEEDVRKWMEYQYEMTFVKKMFRKK 2319
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 92 FVGTSVNRPLVYHHDVQYSSK 154
F + +NR VYH DV YS K
Sbjct: 423 FTESELNRHAVYHSDVMYSCK 443
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 194 PHVPSIFGRSIQGILAFDKTYSTASANITQGGIGYNFVN 310
P+ PS+ R+++ I K SA+ IGY+ VN
Sbjct: 1386 PYEPSVRSRNVKAISGRRKVNRVVSASTINCPIGYDLVN 1424
>Z78416-8|CAB01683.2| 588|Caenorhabditis elegans Hypothetical
protein E01G6.3 protein.
Length = 588
Score = 26.6 bits (56), Expect = 9.5
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +2
Query: 182 HFSLPHVPSIFGRSIQGILAFDKTYSTASANITQGGIGYNFVNLRMKSERGSKIHYDV 355
H S P V S + QGI TY+ A AN GG Y F + + S S + Y V
Sbjct: 369 HDSAP-VNSTYESFTQGIFVSTATYAEAQAN--AGGTVYLFQSNQQPSSHVSDMQYFV 423
>Z69717-4|CAA93533.2| 588|Caenorhabditis elegans Hypothetical
protein E01G6.3 protein.
Length = 588
Score = 26.6 bits (56), Expect = 9.5
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +2
Query: 182 HFSLPHVPSIFGRSIQGILAFDKTYSTASANITQGGIGYNFVNLRMKSERGSKIHYDV 355
H S P V S + QGI TY+ A AN GG Y F + + S S + Y V
Sbjct: 369 HDSAP-VNSTYESFTQGIFVSTATYAEAQAN--AGGTVYLFQSNQQPSSHVSDMQYFV 423
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 254 RSCRRPECPEWTSRIWKVHEAS*NGGFQLSY 162
R C R CP W W S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 254 RSCRRPECPEWTSRIWKVHEAS*NGGFQLSY 162
R C R CP W W S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099
>U40419-1|AAA81422.1| 283|Caenorhabditis elegans Hypothetical
protein C27F2.4 protein.
Length = 283
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 71 IVECGHTFVGTSVNRPLV 124
I++ GH FVG V+RP++
Sbjct: 71 ILDAGHMFVGVDVSRPML 88
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 1 DSCSVPFAMHEVANRCVATRRCGDRGMR 84
D C+V ++MH++ C ++C GM+
Sbjct: 53 DDCNVHYSMHQICRSC-RHKKCLSNGMK 79
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 1 DSCSVPFAMHEVANRCVATRRCGDRGMR 84
D C+V ++MH++ C ++C GM+
Sbjct: 71 DDCNVHYSMHQICRSC-RHKKCLSNGMK 97
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 1 DSCSVPFAMHEVANRCVATRRCGDRGMR 84
D C+V ++MH++ C ++C GM+
Sbjct: 53 DDCNVHYSMHQICRSC-RHKKCLSNGMK 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,811,786
Number of Sequences: 27780
Number of extensions: 202776
Number of successful extensions: 469
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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