Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_N12
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979... 91 7e-19
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 86 3e-17
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 31 1.0
04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577 30 1.8
03_05_0161 + 21400580-21401695 30 1.8
01_05_0630 - 23811576-23811728,23812473-23812561,23812644-238127... 28 5.4
04_04_0387 + 24869594-24871480 27 9.4
>02_04_0659 -
24797477-24797533,24797614-24797726,24797814-24797943,
24798727-24798828,24798951-24798953
Length = 134
Score = 91.1 bits (216), Expect = 7e-19
Identities = 51/126 (40%), Positives = 70/126 (55%)
Frame = +3
Query: 87 GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAP 266
GRVALV G G+LV +VDV+DQ RALVD P + R QI +L LT ++
Sbjct: 10 GRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPK 67
Query: 267 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKS 446
+ KA +A + KW S W +KL +++RA + D+DRFK+ A++KR A
Sbjct: 68 KTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAK 127
Query: 447 LKVKAA 464
LK AA
Sbjct: 128 LKKTAA 133
>04_04_0506 -
25723809-25724299,25725082-25725237,25725316-25725445,
25726484-25726585,25726630-25726671
Length = 306
Score = 85.8 bits (203), Expect = 3e-17
Identities = 45/109 (41%), Positives = 64/109 (58%)
Frame = +3
Query: 87 GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAP 266
GRVALV G G+LV +VDV+DQ RALVD P + R QI +L LT ++
Sbjct: 23 GRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPK 80
Query: 267 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 413
+ KA +A + KW S W +KL +++RA + D+DRFK+ A++K
Sbjct: 81 KTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -1
Query: 544 GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 365
G +VA+L R F A + A FK+L + R L +NL S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379
>04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577
Length = 464
Score = 29.9 bits (64), Expect = 1.8
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = +2
Query: 11 MLFESTLFVLRRCKNVMPFARYVEPGXCRPGSRRSLKGKVSERGRRY*PNSCTG*WTRQW 190
+L + +LR +PF+R + P RR L+ V+E R N G W
Sbjct: 13 LLLSLSFLLLRPASPPLPFSR--QQAASGPDRRRLLRVYVAELPRAL--NH--GLLDLYW 66
Query: 191 ST*ATD---PLKPTPSHKIPPQIRVHSPY 268
S A D P P H P R HSPY
Sbjct: 67 SLPAADSRIPASSDPDHPPPRPPRAHSPY 95
>03_05_0161 + 21400580-21401695
Length = 371
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 223 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 128
SWF C G P P P +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339
>01_05_0630 -
23811576-23811728,23812473-23812561,23812644-23812764,
23812867-23812992,23813399-23813505,23813742-23813856,
23815071-23815274
Length = 304
Score = 28.3 bits (60), Expect = 5.4
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Frame = -1
Query: 571 RHKNNYFLAGFLVAFLVRTFF--AAALGIF-FLPKVPARAAFTFKLLNTAVLARFLL--- 410
R N+ +L G + F + + A+LGI LPK A A+ LL T + + L
Sbjct: 123 RTANSLWLDGRTIHFSINAWVLVVASLGILPILPKHIASKAYRLSLLGTICSSAYSLYVT 182
Query: 409 -------TRAAVNLNLS*SVICARF-SLFANFWAH*LSVHFSLSLASVHAFLTRRVGAVN 254
AA+ L ++ F L + +VH+ ++L V L + V
Sbjct: 183 YGKPRAWNMAAIQPWLQSIIVAKDFVHLMFSLMMFTSNVHYKIALLPV---LCWALDHVA 239
Query: 253 AYLRRNFVRWSWFKRI 206
+LRRNF R S ++++
Sbjct: 240 RFLRRNFARSSLYRQL 255
>04_04_0387 + 24869594-24871480
Length = 628
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +3
Query: 306 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 485
+EK+ + QW Q + + +K ++ + + A+ + NR R K ++++ ARA T
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556
Query: 486 K 488
K
Sbjct: 557 K 557
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,411,013
Number of Sequences: 37544
Number of extensions: 345973
Number of successful extensions: 985
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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