Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_N11
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 29 0.98
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 29 0.98
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 1.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.3
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 3.0
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.0
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 26 5.2
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.2
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 5.2
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 6.9
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 25 9.1
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 28.7 bits (61), Expect = 0.98
Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 1/154 (0%)
Frame = +3
Query: 57 FNRFN*IFMGNRIKMTSASSSSARNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNE 236
F+ F I + ++ ++ S F + L V L +I +
Sbjct: 181 FSTFKSILLNHKSQVAEFISYHFDEFFKQYTVLLKSENYVTKRQSLKLLGEILLNRANRS 240
Query: 237 LLTKAAREMASTEHQIETSEENLKKMQLIAVHIGYQF-ENIHKSAKMLTEINEQITAMQR 413
++T+ + + + + K +Q A H+ F N KS +++ +I +
Sbjct: 241 VMTRYISSAENLKLMMILLRDKSKNIQFEAFHVFKLFVANPEKSEEVI-----EILRRNK 295
Query: 414 *EIIGKLFLFVTTQTNGKRFNQLKAFFIVVVTKL 515
++I L F T + N ++FN +AF I + +L
Sbjct: 296 SKLISYLSAFHTDRKNDEQFNDERAFVIKQIERL 329
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 28.7 bits (61), Expect = 0.98
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +3
Query: 111 SSSSARNLFAESKQRLAER-VQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIE 287
SS+ A F ++ A+R +Q + + ++ +Q G +++ RE+ + Q+E
Sbjct: 415 SSNDAEEQFKQNVVNEAKRYLQETILRLQAIPYHLQVGQAWT---SESERELEKKKEQVE 471
Query: 288 TSEENLKKMQLIAVHIGYQFENIHKSAKMLTEINEQITAM 407
+E L + +++ + EN+ + AK + +E T +
Sbjct: 472 KKQEELMQTRIVLEEQVFLVENMIEDAKAKRKFSEVETLL 511
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 135 FAESKQRLAERVQVNMNNISSLARQI----QRGSKSNELLTKAAREMASTEHQIETSEEN 302
F+ K++ ++ + M + SL ++ Q+ K+NE+++K + H+I E+
Sbjct: 466 FSVEKEKAEQKYFLTMKSTDSLHAEVKLLRQKYQKTNEIISKMLNSQDTAVHRIIEFEDQ 525
Query: 303 LKKMQLI 323
L ++ +
Sbjct: 526 LARLSSV 532
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/107 (16%), Positives = 50/107 (46%)
Frame = +3
Query: 87 NRIKMTSASSSSARNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMA 266
N ++ + +NL ++++R + +Q+ + N+SS A + S+ +RE+
Sbjct: 833 NSLETLVSEKKELKNLL-DAERRSKKAIQLELENLSSQAFRRNLSGSSSPSERSQSRELK 891
Query: 267 STEHQIETSEENLKKMQLIAVHIGYQFENIHKSAKMLTEINEQITAM 407
+ + +E +++ + +I +F ++ +K + E +T +
Sbjct: 892 LLQASEKRLKEQVEERNSLIKNIVTRFTQLNTGSKPVNTNVEALTTI 938
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 117 SSARNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQ 281
S +NL E V + + +L Q+Q + S ELL K ++ STE +
Sbjct: 957 SQLKNLTLSLVVNAEEGVFSTLITVDNLDAQVQSCADSTELLIKVLSDLGSTEDE 1011
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 162 ERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLKKMQLIAVHIGY 341
ER +V + L +I + + NELL K + + ++ + + ++ + +VH
Sbjct: 1502 ERKKVMQQEVLRLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVHADT 1561
Query: 342 Q-FENIHKSAKMLT 380
+ EN+ K+ +ML+
Sbjct: 1562 KDLENLKKTEEMLS 1575
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = +3
Query: 171 QVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLKKMQLIAVHIGYQFE 350
Q ++ + I++GS + L++K + + + E KK+ I HIG
Sbjct: 16 QGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQKKLIRIDDHIGIAIA 75
Query: 351 NIHKSAKMLTEINEQ 395
+ A++L+ +Q
Sbjct: 76 GLAPDARVLSNYMKQ 90
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 1 RPADDLIVDLTK*KNKFLFSIDLIKFLW 84
+ AD +V L K+ F FS +L+KF W
Sbjct: 163 KDADSKLVHLLFFKSLFKFSTNLVKFQW 190
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 26.2 bits (55), Expect = 5.2
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = +3
Query: 21 CGPNKIEKQVFIFNRFN*IFMGNRIKMTSASSSSARNL--FAESKQRLAERVQVNMNNIS 194
CG + + +F + N I+ + + SS F + AER + ++ +
Sbjct: 383 CGKSNLVHSLFDYYSLNSIYFQMIVSCSEIDRSSFAKFQSFWNNVFIQAERYEPSIIYLD 442
Query: 195 SLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLK-KMQLIAVHIGYQF 347
+ I +++ EL RE+A +HQI NLK K ++I + G +F
Sbjct: 443 DVHCLISSSNENGELGFVEEREIAFLQHQI----INLKRKRKIIFIGFGEEF 490
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 245 KSSKRNGINRTSD*NQ*GKFEEDAINSSPHWIS 343
K K INR ++ +ED N+SPHW S
Sbjct: 208 KKRKHENINRGTNARP---LKEDRANTSPHWYS 237
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 383 FCQHFCRLMNVFKLISNVD 327
F HF + NVF L SNVD
Sbjct: 54 FFIHFSKKSNVFSLFSNVD 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,321
Number of Sequences: 5004
Number of extensions: 56978
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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