Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_N11
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087...    30   1.8  
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610...    29   3.1  
06_02_0293 + 13849250-13849341,13850044-13850112,13850257-138502...    29   4.1  
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381...    29   5.4  

>05_06_0066 +
           25307863-25307871,25308431-25308570,25308712-25308754,
           25308994-25310022
          Length = 406

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 126 RNLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIE 287
           R   A    R+AER++ +     +L  ++QRG   +E   KAA E A+    +E
Sbjct: 295 RESAAREAARVAERLRASERAREALEAELQRGRAQSEQWRKAAEEAAAVLAAVE 348


>01_05_0439 -
           22159425-22159520,22160137-22160345,22161028-22161066,
           22161196-22161356,22161447-22161518,22162002-22162183,
           22162580-22162703,22164196-22164299,22165526-22165725,
           22165838-22166069,22166156-22166239,22166329-22166386,
           22166724-22166771,22167924-22168081,22168451-22168501,
           22168585-22168658,22168760-22168835,22169685-22169729,
           22169833-22169899,22169978-22170095,22170580-22170775,
           22171551-22171640,22171985-22172039,22172755-22172975,
           22173362-22173454,22173608-22173721,22173918-22173981,
           22174081-22174181,22174306-22174447,22174528-22174729,
           22174883-22174976,22176172-22176348
          Length = 1248

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -1

Query: 274 SVDAISLAAFVNSSLDLEPL*ICLASDEILFIFTCTLSASLCLDSANKFLALLDDAEVIL 95
           SV+A       ++ +  +PL  CL  D+++ +FT  L     L  +NK+  L   +E I 
Sbjct: 192 SVEAPPKEWLPHADISFQPLVQCLDVDKLIQLFTAVLLERRILLRSNKYTLLTLVSEAIC 251

Query: 94  -ILFPIK 77
            +++P++
Sbjct: 252 HLIYPLR 258


>06_02_0293 +
           13849250-13849341,13850044-13850112,13850257-13850266,
           13850448-13850483,13850978-13851039,13851260-13851359,
           13851428-13851469,13851756-13851839,13851955-13852095
          Length = 211

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = +3

Query: 129 NLFAESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENLK 308
           NL  E  Q  AER++  ++N+    RQ+     +++L      ++ S E+Q+ETS  N++
Sbjct: 65  NLCLEFWQAEAERLKQQLHNLEGSQRQL----LAHDLSGLEWNDLKSLENQLETSLHNVR 120

Query: 309 -KMQLIAVHIGYQFENIHKSAKMLTEINEQI 398
            K   I V    Q + + K   ++   N ++
Sbjct: 121 LKKDKIMVE---QIQELRKKENIMHRENMEL 148


>07_03_1198 +
           24734985-24735169,24737897-24737975,24738070-24738134,
           24738214-24738313,24738429-24738470,24739062-24739100,
           24739140-24739330,24739745-24739850
          Length = 268

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = +3

Query: 141 ESKQRLAERVQVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQIETSEENL--KKM 314
           E ++   +   +  + + +L +  QR     +L T   +E+   EHQ+E S +++  KK 
Sbjct: 86  EDQENWGDEYGILKSKLDALQKS-QRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKN 144

Query: 315 QLIAVHIGYQFENIHKSAKMLTEINEQIT 401
           QL+   I  + +   KS K    + ++IT
Sbjct: 145 QLLFESIS-ELQKKEKSLKNQNNVLQKIT 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,344,828
Number of Sequences: 37544
Number of extensions: 287322
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)