Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_N11
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    27   0.26 
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   4.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   7.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = -3

Query: 212 NLSRQRRNIVHIHLHSFSEPLFGLREQIPSATG*CGSHFNSISHKNLIKSIENK 51
           +L+R RR+I ++H     EP+  + +++ S+     +H  SI H+   K+ + +
Sbjct: 14  SLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNH-KSIYHRQHSKNEQQR 66


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 83  HKNLIKSIENKNLFFYFVRSTIKSSAG 3
           H N+  S+   NLF+ FV +   S  G
Sbjct: 25  HNNMCTSLNLSNLFWLFVGTYFPSLIG 51


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 392 TNYSYAKMRNYWETVFVCDY 451
           TNYS   MR Y +  +  DY
Sbjct: 204 TNYSSKNMREYNDPEYKLDY 223



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 27  PNKIEKQVFIFNRFN 71
           PN   K VFI+NR N
Sbjct: 666 PNMYFKDVFIYNRPN 680


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 27  PNKIEKQVFIFNRFN 71
           PN   K VFI+NR N
Sbjct: 666 PNMYFKDVFIYNRPN 680


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 171 QVNMNNISSLARQIQRGSKSNELLTKAAREMASTEHQI 284
           +VN+  +   A  I+    ++ LLTK A +    E  I
Sbjct: 640 KVNLTRVDMYANMIETMELTSLLLTKVAEDRPLPEFYI 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,151
Number of Sequences: 438
Number of extensions: 3403
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)