Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_N08
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    35   0.015
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    28   1.7  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.9  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   9.1  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.1  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = +3

Query: 51  CVECIDSGKMTKDLVICIHGLANTKEGMFLHTEDFLEAIAEQLERKL 191
           CV C++ G MTKDL +    L+ +  G ++ T +FL+A+  +L+ +L
Sbjct: 373 CVRCVEKGIMTKDLYL----LSKSPNG-YVDTFEFLDAVKSELDSEL 414


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 118 TRKKVCFYTPKIXXXXXXXXXXXXXXXXKNTQSPINNTP*LNIGTQAEILLLHPPNYVYF 297
           ++KKV F+ PK                 +N +S +++        Q ++L +H PNY+  
Sbjct: 191 SQKKVGFFKPK-SNAQLTKLEDEARLKAENAESDMHSKIENAQNVQKQLLCIHRPNYIKQ 249

Query: 298 FFTL 309
           FF+L
Sbjct: 250 FFSL 253


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 286 YVYFFFTLILLGPAFFSYL 342
           Y+YFFF   L  P  F Y+
Sbjct: 82  YIYFFFYSFLCSPYLFKYI 100


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 140 THRRFPGGDRRAAGTQVGRQIKTHNH 217
           T+    G D +  GTQV  Q+  HNH
Sbjct: 433 TYAMNEGEDLKGWGTQVYPQVNAHNH 458


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 142  CKNIPSFVFANPCIQITKSFVIL 74
            C ++ S + +N C+ I +SF++L
Sbjct: 1227 CSDMVSNILSNECLPIKESFIVL 1249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,547
Number of Sequences: 5004
Number of extensions: 55462
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)