Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_N08
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 58 1e-08
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 56 3e-08
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 55 5e-08
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 50 3e-06
01_06_0695 - 31292622-31293317 30 2.4
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 29 3.1
01_07_0293 - 42567564-42567751,42567905-42567994,42569028-425691... 29 5.4
04_04_1095 - 30839573-30839769,30839817-30839964,30840421-308409... 28 9.5
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 57.6 bits (133), Expect = 1e-08
Identities = 24/47 (51%), Positives = 37/47 (78%)
Frame = +3
Query: 51 CVECIDSGKMTKDLVICIHGLANTKEGMFLHTEDFLEAIAEQLERKL 191
C+E ++SGKMTKDL + IHG T+E +L+TE+F++A+A+QL K+
Sbjct: 397 CIETVESGKMTKDLALLIHGPKVTRE-FYLNTEEFIDAVAQQLREKI 442
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 56.0 bits (129), Expect = 3e-08
Identities = 20/47 (42%), Positives = 35/47 (74%)
Frame = +3
Query: 51 CVECIDSGKMTKDLVICIHGLANTKEGMFLHTEDFLEAIAEQLERKL 191
C+ ++SGKMTKDL + +HG +N +L+TE+F++A+A++L +L
Sbjct: 363 CIGAVESGKMTKDLALLVHGSSNVTRSHYLNTEEFIDAVADELRSRL 409
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 55.2 bits (127), Expect = 5e-08
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = +3
Query: 51 CVECIDSGKMTKDLVICIHGLANTKEGMFLHTEDFLEAIAEQLERKL 191
CV ++SGKMTKDL + IHG +N +L+TE+F++A+A +L +L
Sbjct: 363 CVGTVESGKMTKDLALLIHGSSNVTRSHYLNTEEFIDAVAAELRSRL 409
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +3
Query: 51 CVECIDSGKMTKDLVICIHGLANTKEGMFLHTEDFLEAIAEQLERKL 191
CV ++SGKMTKDL + +HG N +L+T +F++A+AE L +L
Sbjct: 424 CVGTVESGKMTKDLALLVHG-PNVSRDKYLNTVEFIDAVAEDLRTRL 469
>01_06_0695 - 31292622-31293317
Length = 231
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 597 QQGPRSPSSSNPSLETKGSTSELTHRHSPLSFSP 496
QQ P SPSSS S + ++ H +PL SP
Sbjct: 13 QQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSP 46
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = -1
Query: 591 GPRSPSSSNPSLETKGSTSELTHRHSPLSFSPDLLSGSRFRS 466
GP SPSSS+PS T S L+ S S +P S S RS
Sbjct: 44 GPSSPSSSSPSTPTAAGLSFLSSPGSSASPNPAPRSRSSRRS 85
>01_07_0293 -
42567564-42567751,42567905-42567994,42569028-42569195,
42569284-42569562,42569673-42569739
Length = 263
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 645 DKGHNDT*FTFCLSEFQQGPRSPSSSNPSLETKGS 541
D+G ND T S QQ SPSSS+ + T S
Sbjct: 29 DRGENDETLTLARSLEQQAKVSPSSSSEKISTPSS 63
>04_04_1095 -
30839573-30839769,30839817-30839964,30840421-30840903,
30841419-30841910,30842267-30842362
Length = 471
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 264 SVVASPELCILFFYAHIARPCFFFLPMLIPL 356
S + +C LFF AH RPC F P L+ +
Sbjct: 37 SSIEGKRIC-LFFSAHWCRPCRNFTPKLLQI 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,551,338
Number of Sequences: 37544
Number of extensions: 364775
Number of successful extensions: 802
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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