Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_N07
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...   183   3e-47
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    31   0.14 
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.74 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.74 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    28   1.3  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    28   1.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.3  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    26   6.9  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   9.1  

>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score =  183 bits (445), Expect = 3e-47
 Identities = 88/246 (35%), Positives = 145/246 (58%), Gaps = 2/246 (0%)
 Frame = +1

Query: 43   DESAVPTVQYDFLPISEIANKETETLIDLIGVCKSASDVQELTAKSTGKLLKKREVMLVD 222
            D++AVP  ++ F+ + E+ +   + +ID+IGV ++   VQ++T+++T +   KR++ +VD
Sbjct: 286  DQTAVPVAKFSFVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVD 345

Query: 223  ASGGAVTLTLWGNEAEKFEGNTNPILAVKGARLTEFNGSKSLSCLWSTMLRLNPDVPEAH 402
             +G  + +TLWG  A +F  +   ILA KG ++ +F G +SLS L S+ + ++PD+ E+H
Sbjct: 346  QTGYEMRVTLWGKTAIEFSVSEESILAFKGVKVNDFQG-RSLSMLTSSTMSVDPDIQESH 404

Query: 403  KLRGWYDNGGADADIVNISAKSGNF--TGGSNEWISFSEAESRQLGTGEKGDYYSLLGVL 576
             L+GWYD  G   +    S  S     TG S E  + +E ++  LG  E  DY+SL G +
Sbjct: 405  LLKGWYDGQGRGQEFAKHSVISSTLSTTGRSAERKNIAEVQAEHLGMSETPDYFSLKGTI 464

Query: 577  TFTFSENAVYKACPQEQCNKKLVDQENGLFRCEKCNXEYPNYKHRILLAANVSXPTGDQR 756
             +   +N  Y ACP   CNKK+ DQ  G +RCEKCN EY   ++R ++   V   TG   
Sbjct: 465  VYIRKKNVSYPACPAADCNKKVFDQ-GGSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLW 523

Query: 757  VTLFNE 774
            + +F++
Sbjct: 524  LNVFDD 529


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 554 TTVSSAY*RLRFPKMPCTRHVRKNSATRNLSIKKMAYS-DARNVIXNILITNTGSYWRQT 730
           ++VS+ Y  + F K+P    +RKN A  +  +  M  S D RN + +    + G  +   
Sbjct: 241 SSVSTDYRPVNFGKVPSYSKLRKNKAFSSAKVSDMYLSADERNRLEDFSKGDRGLSFVNL 300

Query: 731 SXILLATNVSRFST 772
           S  + AT+  R ST
Sbjct: 301 SPNIKATSYDRLST 314


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 640 LVDQENGLFRCEKCNXEYPNYKH 708
           LVD E+G+ RC +C  E  N  H
Sbjct: 184 LVDSEDGVLRCARCQWELENPYH 206


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 551 SPFSPVPS*RLSASENDIHSFEPPVKLPDLADMLTMSASAPP 426
           SP  P PS   S+S +D+       K PD  D+  +S S PP
Sbjct: 87  SPHIPSPSSFSSSSSSDLDKSMLDEKHPDSEDITAVSLSTPP 128


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 580 FTFSENA--VYKACPQEQCNKKLVDQENGLFR 669
           FT SEN   + K  P ++CN+ L D +NG ++
Sbjct: 476 FTGSENCQKLSKQIPLDECNEALFDDDNGDYK 507


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
 Frame = +1

Query: 226 SGGAVT-LTLW-----GNE---AEKFEGNTNPILAVKGARLTEFNGSKSLSCLWSTMLRL 378
           +GGA   LT+W     GN+   A K+      IL +     T +NG   L  +W+  + L
Sbjct: 97  NGGAYDRLTMWEQLDEGNQYTPARKYLLVLPIILFLMSTHYTHYNGWMFLVNIWALFMVL 156

Query: 379 NPDVPEAHKLR 411
            P +P  H+ R
Sbjct: 157 IPKLPAVHRKR 167


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +2

Query: 398 LTN*EAGTTT-EGQMPTSSTYLLSRVTSRVVRMNGYRFRKPR-AVNWAPVR-KAITTVSS 568
           LTN  A  TT E + PTSS Y     TS+V R N Y   KP+ +VN +  R K++ + +S
Sbjct: 364 LTNTAAAPTTYEYKRPTSS-YTAKDATSKVYRSNTY---KPKSSVNGSVYRSKSVKSTTS 419


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 305 TAKIGFVFPSNFSASLPHSVSVTAPPEA 222
           +A + F FP+N  A  P+ VSV  P  A
Sbjct: 160 SAVLPFAFPANGGAPGPYRVSVVVPAAA 187


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 505 FSEAESRQLGTGEKGDYYSLLGVLTFTFSENAVYKACPQEQCNKKLVDQEN 657
           F E    +L  G K   +++   LT++ ++++ YK  P E   + + + EN
Sbjct: 191 FCEVHDAELNDG-KDCVHAIPHGLTYSHTDSSTYKVFPIEDLKRLVYETEN 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,310
Number of Sequences: 5004
Number of extensions: 60144
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)