Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_N05
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 42 1e-04
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 38 0.002
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 37 0.003
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 31 0.25
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 30 0.44
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 29 1.0
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.3
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 27 3.1
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 5.4
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 7.1
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 26 7.1
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.4
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 9.4
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 9.4
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 25 9.4
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 41.5 bits (93), Expect = 1e-04
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +1
Query: 244 DRVIDLGCADGSVTDILKVYMPKNYGRLVGCDISEEMVKYANKHHGFGRTSFRVLDIEGD 423
D ++DLGC DG +T+ L R+VG D S +M+K A + G ++ V+ E
Sbjct: 35 DELLDLGCGDGVLTNEL----VSQCRRVVGIDASPDMIKAARE---LGLNAY-VIPGEKL 86
Query: 424 LTAD--LKQGFDHVFSFYTLHWIRDQER 501
L A + FD VFS LHWI Q +
Sbjct: 87 LDASEIPSESFDVVFSNAALHWIMRQPK 114
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 37.5 bits (83), Expect = 0.002
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Frame = +1
Query: 229 WKKIGDRVIDLGCADGSVTDILKVYMPKNYGRLVGCDISEEMV-----KYANKHHGFGRT 393
WKK G ++D C G ++ L Y + +VG D+S++MV K+ + R
Sbjct: 74 WKKSGMSILDFACGTGLISQHLFPYCKQ----IVGIDVSQDMVDVYNEKFRKMNIPKERA 129
Query: 394 SFRVL---DIEGDLTADLKQGFDHVFSFYTLHWIRDQERAFRNIFNLLGDEG 540
VL D++G+ FD V H I+D + + LL G
Sbjct: 130 CAYVLSLDDLDGNGDEPFSTEFDAVVCSMAYHHIKDLQEVTNKLSKLLKPNG 181
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = +1
Query: 223 IKWKKIGDRVIDLGCADGSVTDILKVYMPKNYGRLVGCDISEEMVKYANK 372
+K+ K DR++D+GC G++T Y+P+ G ++G + S+E++ A +
Sbjct: 35 LKYVKKTDRILDVGCGPGTITVGFPKYVPE--GEVIGVEPSQELLDKAEE 82
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 30.7 bits (66), Expect = 0.25
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +1
Query: 130 KSKMNNADLYRKSNSLQKRDALRCLEEHANKIKWKKIGDRVIDLGCADGSVTDILKVYMP 309
K+K N RKS + +E+ + + K G V+DLGCA G + I ++
Sbjct: 42 KTKKNTLISLRKSAETANE---KFIEKINKEHQLFKPGQIVVDLGCAPGIWSTIAARHVG 98
Query: 310 KNYGRLVGCDI 342
+GR++ CDI
Sbjct: 99 L-FGRVIACDI 108
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 29.9 bits (64), Expect = 0.44
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -3
Query: 263 PKSMTLSPIFFHLILFACSS 204
P+++TL+PI+FHL +FA S
Sbjct: 311 PETITLAPIYFHLAIFATFS 330
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -2
Query: 741 RFALHFNIXKSNSFHYLLNFFFGIFIVMVR*YKSIDVLEPRMPFFCMRECAVNIKDRS 568
RF LH N HY ++ + +FI + L P +P ++E A + K S
Sbjct: 680 RFYLHLGKLSENYIHYYVDSMYALFIYSTDIPLKAEPLVPDLPVKQLKEKASHFKRHS 737
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 617 ILGSSTSIDLYHLTMTMKIPKKKLR-R*WKEL 709
I+G T +DL+ T T++ KK+L+ R W EL
Sbjct: 171 IMGVLTHLDLFKKTSTLREAKKRLKHRFWTEL 202
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 361 YANKHHGFGRTSFRVLDIEGDLTADLKQGF 450
Y+NKH G T F L +G L + + GF
Sbjct: 252 YSNKHRGTAITIFAALVFDGPLVSPIIGGF 281
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 528 KQIENVPESSFLVSDPVEGVKRENVIKALFQVCGQIALYVEHPE 397
K E + S V++ V+G E +++LF+ G++ V HPE
Sbjct: 866 KSFEQIKSKSLGVTN-VDGTVNEARLRSLFESYGKLYRVVLHPE 908
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Frame = +1
Query: 265 CADGSVTDILKVYMPKNYGR-------LVGCDISEEMVKYANKHHGFGRTSFRVLDIEGD 423
C ++ ++ Y PKN ++ +SE + +Y +KH G+ + + + D
Sbjct: 174 CVSLGISPNIRCYYPKNAPHASKTMSFILANQLSEIVEEYCSKHPGYHEAASKSTCLIVD 233
Query: 424 LTADLKQGFDHVFSFYTL 477
+ D F H F++ +
Sbjct: 234 RSLDTAAPFLHEFTYQAM 251
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 286 DILKVYMPKNYGRLVGCDISE 348
DIL Y+P Y +V C++SE
Sbjct: 512 DILSKYLPVKYEHVVFCNLSE 532
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 606 CMRECAVNIKDRSVAQEQK*AISFVAKQIENVPESSFLVSDPVEGVKRENVIKALFQVC 430
C+R C + S A K SF+ ++NV + F VSD + +I + F+ C
Sbjct: 271 CLRICCNSSSFWSAADSFKEVSSFLKNLLKNVTATPFEVSD----MNWAYIIASFFRTC 325
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 296 FKISVTLPSAQPKSMTLSPIFFHLILFA 213
FK VTL +P +M +PI F + +FA
Sbjct: 270 FKEFVTLHLVRPFAMLATPIVFFIAMFA 297
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 9.4
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +1
Query: 52 HIARA*FNTNLKKKSADKYFIAKKNIKSKMNNADLYRKSNSLQKRDALRCLEEHANKIKW 231
H +A N K A K + ++++KS D+ + A + +++ K+K
Sbjct: 67 HQDKAESKVNEGKNEAAKV-VKEEDLKSSETGKDV---ETAAAAAAAAKKKKKNKKKVKA 122
Query: 232 KKIGDRVIDLGCADGSVTDILK 297
KK+GD +D + SV + K
Sbjct: 123 KKVGDSSVDKIATEESVKSMTK 144
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 526 LGDEGDCLLLFL-GHTPIFDVYRTLSHTEKWHSWLEHVDRFISPY 657
+ ++ +CLLL L GH+P ++ R L HT + +L FI+ +
Sbjct: 428 MAEQINCLLLELTGHSPDSELRRFLQHTPQEVLYLGFRKYFITHF 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,334
Number of Sequences: 5004
Number of extensions: 78927
Number of successful extensions: 267
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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