Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_N03
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    28   0.58 
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   5.4  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    24   9.4  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    24   9.4  

>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 7   ADKSLPPSKNNLIQVAIGSIEIFSISNNIDNVQKLK 114
           + K L  +KN+  Q+A+ ++     S N+DN+Q +K
Sbjct: 164 SSKILSQNKNHFAQLAVDAVLRLKGSTNLDNIQIIK 199


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 16  SLPPSKNNLIQVAIGSIEIFSISNNIDNVQKLKKVRRHIP 135
           SLP   NNL      S  + + S  I+ +Q +KK++  +P
Sbjct: 442 SLPLDTNNLSNSEPPSHVLDASSETIEVIQTIKKLQNQVP 481


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 135 WYV---PSNLFKFLYIIYVITY*KYFDTTY 55
           WY+   P+ L+ F  +  ++TY K F+T +
Sbjct: 357 WYLHNDPAPLYSFTRVSGIVTYMKIFETEH 386


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 308 HKFIPESLMYILEVYKKIDYFSYKISL 228
           H F PE L   +E YK ++ ++  ++L
Sbjct: 855 HVFTPEDLRLAVEEYKSLNAYTTAVNL 881


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,233,751
Number of Sequences: 5004
Number of extensions: 21248
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)