Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_N03
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   4.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 330 YSRLYCHSQVHSRVV 286
           Y RLYC++Q H + +
Sbjct: 212 YCRLYCYAQKHVKSI 226


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 92  MLLLIENISILPIA 51
           +LLL+ N+ ILP+A
Sbjct: 96  LLLLVANLIILPVA 109


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 92  MLLLIENISILPIA 51
           +LLL+ N+ ILP+A
Sbjct: 96  LLLLVANLIILPVA 109


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 92  MLLLIENISILPIA 51
           +LLL+ N+ ILP+A
Sbjct: 96  LLLLVANLIILPVA 109


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -2

Query: 321 LYCHSQVHSRVVNVHFGG 268
           ++C+ + H R++++  GG
Sbjct: 219 VWCNEEDHLRIISMQMGG 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,855
Number of Sequences: 438
Number of extensions: 1595
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)