Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_N01
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   206   2e-54
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    28   1.8  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   5.5  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    26   5.5  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   7.2  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   7.2  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.6  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   9.6  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  206 bits (504), Expect = 2e-54
 Identities = 91/127 (71%), Positives = 112/127 (88%)
 Frame = +1

Query: 424 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 603
           FLFTSESVGEGHPDK+CDQISDAILDA L  DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64

Query: 604 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHXNRNDEEVGAGDQGL 783
           DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H  +  EE+GAGDQG+
Sbjct: 65  DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124

Query: 784 MFGYATD 804
           MFGYATD
Sbjct: 125 MFGYATD 131


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
 Frame = +1

Query: 328 WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDA 504
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L  
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRL 692

Query: 505 HLNQDPDAKVACETITKTGMVLLCGEITSKANV 603
                   K   E        L+ G+ TS+ ++
Sbjct: 693 RAE-----KTLVENALSENFTLMLGQSTSEESL 720


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 474  RPNKRRYSRRAPESGSGRKSCM 539
            +P KR+Y+R+AP   S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 460 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 564
           P K  ++  D ++ + H N DPDAK+A   ++K  M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 696 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 571
           EH+  C+   + G ++++   DR    + I  +S  C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 592 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 711
           + N DY K+  E VK  G D+       K C  ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 480 LVAHFVWMTLANRFRCEQKY*SIFHII 400
           L+ HFVW +      CE+K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 727 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 608
           Q  +V V + +   CM+ +QSL  + HN ++  F+ +L D
Sbjct: 61  QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,153
Number of Sequences: 5004
Number of extensions: 70181
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)