Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_M24
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo... 71 2e-13
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 28 1.4
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 28 1.9
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p... 27 2.5
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 3.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.9
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.9
>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 71.3 bits (167), Expect = 2e-13
Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Frame = +1
Query: 298 LTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGVPEPNSKNWETLTLSL 477
L+ KEKK L+ +P+ + Y ++ +W YI EV+A G E+L L
Sbjct: 74 LSSKEKKKLQLNVVPKIA-DYSQFKHLHSMWCSYILEVIAGCTG---------ESLMAKL 123
Query: 478 YKADYHGCMLTVVRSKCPSFINKTGICIMDTKNTFKIVSXDNIVTTIPKKECVFELYL-- 651
KA+Y G + V+RSK + + GICI ++K+ +++ +N V +PK++ V ++ +
Sbjct: 124 AKAEYQGAYMQVLRSKSTTRVGLEGICIHESKHMLSLITKENRVVRVPKQDSVMKVIVDV 183
Query: 652 --KKFKVTLFGKLLCAKPAERSTKKIKGXLXPDL 747
+K L+ + L + +RS K+ K DL
Sbjct: 184 PQRKLVFELYTQHLLLRAGDRSNKRFKSKNTIDL 217
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 565 DTKNTFKIVSXDNIVTTIPKKECV 636
+ K F++V+ +NI+TT PK + V
Sbjct: 55 EVKTDFEVVNNENIITTTPKHQTV 78
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 27.9 bits (59), Expect = 1.9
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 6/131 (4%)
Frame = -3
Query: 410 TSVIYSNQ------ILFICTTSSYFTLCRGIL*NRSVFFSLRVKHLVFFLIGLRFCCLLR 249
T I+SNQ ++F C + S + G S+F + L+ F+ ++
Sbjct: 155 TKSIFSNQKMTAYTVIFYCFSPSGIYMSVGY--TESLFAAFSFLGLLLFIKKQQYPAA-- 210
Query: 248 FFAKTSSVFNSESIFWTSFLGTFVLRKLMIEFAAC*LNESVVSSILQRNVRLVLFQIIKI 69
F +++ S IFW F G + L I L VS ++ + ++ +
Sbjct: 211 FLWSLATLIRSNGIFWCIFFGMPAIGTLKISLERLQLTFMQVSQLVGYGTKCLIILVPFF 270
Query: 68 *NNFFDTRDFC 36
N + + FC
Sbjct: 271 YNQYLGFKLFC 281
>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 289
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 520 NGLPLTCIHDSPLYTNLRLTFPN 452
NG P++ HD PLY N T N
Sbjct: 24 NGTPISSWHDIPLYANAEKTILN 46
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +1
Query: 394 EYITEVLAMDDGVPEPNSKNWETLTLSLYKADYHGCMLTVVR 519
E+ + ++++ + E ++W+TL L ++ + GC ++V R
Sbjct: 169 EWQQSIKSIEEELVEKYQQSWKTLFLKKPRSRFDGCYISVCR 210
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 146 RLQIQSLISSKQMFLKTRSKKLIRN*KPNSFLRKSAASNKNVNQSRKKPDV*LVKRKKHF 325
R Q+Q+ K+ K + RN + + R +SNK +N +RK+ ++ L F
Sbjct: 203 RFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDF 262
Query: 326 DFTI 337
+I
Sbjct: 263 KCSI 266
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 146 RLQIQSLISSKQMFLKTRSKKLIRN*KPNSFLRKSAASNKNVNQSRKKPDV*LVKRKKHF 325
R Q+Q+ K+ K + RN + + R +SNK +N +RK+ ++ L F
Sbjct: 203 RFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDF 262
Query: 326 DFTI 337
+I
Sbjct: 263 KCSI 266
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 617 IVVTILSXETILKVFFVSIMHIPVL 543
+V+T L T+ KV V +HIPVL
Sbjct: 186 LVLTFLDTTTVSKVNIVLEIHIPVL 210
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 146 RLQIQSLISSKQMFLKTRSKKLIRN*KPNSFLRKSAASNKNVNQSRKKPDV*LVKRKKHF 325
R Q+Q+ K+ K + RN + + R +SNK +N +RK+ ++ L F
Sbjct: 203 RFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDF 262
Query: 326 DFTI 337
+I
Sbjct: 263 KCSI 266
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 146 RLQIQSLISSKQMFLKTRSKKLIRN*KPNSFLRKSAASNKNVNQSRKKPDV*LVKRKKHF 325
R Q+Q+ K+ K + RN + + R +SNK +N +RK+ ++ L F
Sbjct: 203 RFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDF 262
Query: 326 DFTI 337
+I
Sbjct: 263 KCSI 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,820
Number of Sequences: 5004
Number of extensions: 71834
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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