Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M24
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0183 - 23051159-23051295,23051705-23051809,23051904-230519...    64   1e-10
11_04_0344 - 16590803-16591433,16591598-16591914,16592300-165923...    31   1.1  
03_06_0141 - 31955782-31956801                                         29   6.0  

>05_05_0183 -
           23051159-23051295,23051705-23051809,23051904-23051962,
           23052620-23052688,23052892-23053154,23053367-23053431,
           23053510-23053735,23053824-23053839,23054231-23054420,
           23055384-23055399
          Length = 381

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
 Frame = +1

Query: 292 RCLTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGVPEPNSKNWETLTL 471
           R ++ K+ K    +++P    K++    M+++W EYITE   +    P+      + L+ 
Sbjct: 238 RHMSLKQHKKCGSFDLPETLRKFDLYKPMHEMWKEYITE---LTKSTPK------KQLSE 288

Query: 472 SLYKADYHGCMLTVVRSK-CPSFINKTGICIMDTKNTFKIVSXDNIVTTIPKKECVFELY 648
           +L  AD HG ++ V   K   S+    GI I DT  TF I+S DN    +PK   VF L 
Sbjct: 289 TLLSADLHGALVIVAECKSASSYQGVCGIMIRDTAETFGIISDDNRFRVVPKAGSVFILQ 348

Query: 649 LKKFKVTLFGKLL 687
              +KVTL G  L
Sbjct: 349 ADCWKVTLIGDKL 361


>11_04_0344 -
           16590803-16591433,16591598-16591914,16592300-16592395,
           16592505-16592540
          Length = 359

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 457 ETLTLSLYKADYHGCMLTVVRSKCPSFINKTGICIMDTKNTFKIVS 594
           + L LSL++ D+  C L   R++ PS    T  C++  + +F + S
Sbjct: 309 DRLPLSLHRPDFVTCALDDARAQPPSAATATVTCLLVRRRSFDVTS 354


>03_06_0141 - 31955782-31956801
          Length = 339

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 603 IIXGDNFKSVLCVHNAYSGFIDKAWTFGTDYR*H 502
           II GD+F+  L +  A +G  D A   G  YR H
Sbjct: 77  IILGDDFRRRLALQAAANGGFDPALLLGVSYRLH 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,293,329
Number of Sequences: 37544
Number of extensions: 376415
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)