Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M21
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41278-7|AAT81193.1|  680|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U41278-6|AAK31510.3|  771|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine r...    29   2.9  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical...    28   6.7  

>U41278-7|AAT81193.1|  680|Caenorhabditis elegans Hypothetical
           protein F33G12.6b protein.
          Length = 680

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 25  MLTFLCLFALVLGVKSASAPFITPCKVGDSACF 123
           MLT LC+ ALV  V+  +   +  C VGDS CF
Sbjct: 287 MLTTLCV-ALVAPVRRGNGWALCVCNVGDSLCF 318


>U41278-6|AAK31510.3|  771|Caenorhabditis elegans Hypothetical
           protein F33G12.6a protein.
          Length = 771

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 25  MLTFLCLFALVLGVKSASAPFITPCKVGDSACF 123
           MLT LC+ ALV  V+  +   +  C VGDS CF
Sbjct: 287 MLTTLCV-ALVAPVRRGNGWALCVCNVGDSLCF 318


>AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 19 protein.
          Length = 301

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 515 FHDSICQCGLPSAPVTVTRSFAVL-ITMSRILILYFP 408
           +H+ I   G PS+ V  TRS   L I+M R+   Y P
Sbjct: 81  YHNLIFYLGFPSSNVDATRSMVSLAISMERVAAAYIP 117


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = -3

Query: 510  RLDMPVRFAVSSCHCHQIVCSLDHDVSYFDIVFSFAFNGKHQQFTAKFVITS*CHGTFDG 331
            R+ +P  F VSS H +    + D   + F  VF    + + Q  T   ++ +  +GT + 
Sbjct: 904  RIRVPELFPVSSFHIYADKSTDDKLTNQFMEVFKSIASNEPQSSTTHCIVKTSRNGTLET 963

Query: 330  DRLLLFGWIVFNTFHV 283
            D L    WI   T  V
Sbjct: 964  DSLESLLWIFNGTIIV 979


>AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical
           protein F16B4.10 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 530 TSYVCFHDSICQCGLPSAPVTVTRSFAVL-ITMSRILILYFP 408
           +S+   +  +   GLP + ++  R+F VL I M R+L  Y P
Sbjct: 69  SSFFISNSDLFWLGLPFSNISAARTFIVLIIVMDRLLATYLP 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,189,821
Number of Sequences: 27780
Number of extensions: 398741
Number of successful extensions: 918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)