Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M21
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    62   4e-12
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.35 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   10.0 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   10.0 

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 62.5 bits (145), Expect = 4e-12
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
 Frame = +1

Query: 163 GIPDLGIKPLDPLHI-SV-INGNQGGLELT--FKDTIVRGLS-GCHVEGVKNDPAKK-KQ 324
           G+    I P++PL + SV I  +QG + L   +K+  + GL+    ++    D  K    
Sbjct: 58  GLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILS 117

Query: 325 AVTIKCSVTLTGDYKLSGKLLVLPIEGEGKYNIKIRDIVIKTANDLVTVT-GADGKPHWH 501
           + +    V    DYK+ GK+L+LP+ G GK NI + D  +K+ ND+       +G+ +  
Sbjct: 118 SESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYD--LKSHNDIYCEKYEKNGETYLR 175

Query: 502 IESWKHTYEVKTG-AHFQFENLFNGNKVLATPVEEFVNSNWKDVMQE 639
           I+  KH  +        +FENLF+GNK L   +  F+N N + + +E
Sbjct: 176 IK--KHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKE 220


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 698 CTRLCRLXNFTCSKLIVILKGKAVYVI 778
           CT++    NFTC +++ +LK +  Y +
Sbjct: 222 CTQVYSTGNFTCLEVVFVLKRRLGYYL 248


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 116 PVLWLLHKRQCRSWPPVFPTWASS 187
           P+ +  HK   R W  +   WA S
Sbjct: 291 PIKYAKHKNNRRVWLTILLVWAIS 314


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 137 KRQCRSWPPVFPT 175
           K  CRSW   FPT
Sbjct: 398 KNCCRSWLSKFPT 410


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 137 KRQCRSWPPVFPT 175
           K  CRSW   FPT
Sbjct: 398 KNCCRSWLSKFPT 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,035
Number of Sequences: 438
Number of extensions: 4873
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)