Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M20
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   122   2e-29
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   122   2e-29
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   0.92 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   6.5  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  122 bits (295), Expect = 2e-29
 Identities = 60/97 (61%), Positives = 69/97 (71%)
 Frame = +1

Query: 37  LLDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXX 216
           + DL+G+ETI RVTGGMKVK DRDE+SPYAAMLAAQD A KCK +GITALHIK+RA    
Sbjct: 32  ITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKIRATGGT 91

Query: 217 XXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 327
                   AQ          M+IGRIEDVTP+P+DST
Sbjct: 92  ATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128



 Score = 31.1 bits (67), Expect = 0.098
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 3  IFASFNDTFVHVT 41
          IFASFNDTFVH+T
Sbjct: 21 IFASFNDTFVHIT 33


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  122 bits (295), Expect = 2e-29
 Identities = 60/97 (61%), Positives = 69/97 (71%)
 Frame = +1

Query: 37  LLDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXX 216
           + DL+G+ETI RVTGGMKVK DRDE+SPYAAMLAAQD A KCK +GITALHIK+RA    
Sbjct: 32  ITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKIRATGGT 91

Query: 217 XXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 327
                   AQ          M+IGRIEDVTP+P+DST
Sbjct: 92  ATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128



 Score = 31.1 bits (67), Expect = 0.098
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 3  IFASFNDTFVHVT 41
          IFASFNDTFVH+T
Sbjct: 21 IFASFNDTFVHIT 33


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 58  ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 159
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -2

Query: 270 TSKSPKCRLSTRTRGLCFVSTSSTE----LYVQGRYAKSFAFLCYILCR 136
           +SK     L++R   +   S+SSTE    L+  GR++ + + L Y LC+
Sbjct: 23  SSKDAATSLASRVLTIAKGSSSSTEFSNALHTFGRFSDNDSVLIYDLCK 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,540
Number of Sequences: 5004
Number of extensions: 30220
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)