Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_M20
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 129 1e-30
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 116 8e-27
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 107 5e-24
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 1e-06
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 31 0.53
06_03_0265 - 18923597-18924367,18924459-18924704 29 2.1
09_03_0201 - 13466189-13466422,13466508-13467280,13467490-134676... 28 4.9
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 27 6.5
05_03_0656 - 16676406-16676654 27 6.5
06_03_0264 - 18916879-18916920,18917871-18918563 27 8.6
06_03_0263 - 18910447-18911217,18911311-18911556 27 8.6
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 129 bits (311), Expect = 1e-30
Identities = 64/95 (67%), Positives = 71/95 (74%)
Frame = +1
Query: 43 DLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXX 222
DLSGRET+ R+TGGMKVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA
Sbjct: 68 DLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKT 127
Query: 223 XXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 327
AQ MKIGRIEDVTPVP+DST
Sbjct: 128 KTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 162
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 3 IFASFNDTFVHVT 41
IFASFNDTF+HVT
Sbjct: 55 IFASFNDTFIHVT 67
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 116 bits (280), Expect = 8e-27
Identities = 64/106 (60%), Positives = 71/106 (66%), Gaps = 11/106 (10%)
Frame = +1
Query: 43 DLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXX 222
DLSGRET+ R+TGGMKVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA
Sbjct: 46 DLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKT 105
Query: 223 XXXXXXAQXXXXXXXXXXMKIGRI-----------EDVTPVPSDST 327
AQ MKIGRI EDVTPVP+DST
Sbjct: 106 KTPGPGAQSALRALARSGMKIGRIADDVLSIFCHTEDVTPVPTDST 151
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 3 IFASFNDTFVHVT 41
IFASFNDTF+HVT
Sbjct: 33 IFASFNDTFIHVT 45
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 107 bits (257), Expect = 5e-24
Identities = 54/84 (64%), Positives = 60/84 (71%)
Frame = +1
Query: 43 DLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXX 222
DLSGRET+ R+TGGMKVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA
Sbjct: 45 DLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKT 104
Query: 223 XXXXXXAQXXXXXXXXXXMKIGRI 294
AQ MKIGRI
Sbjct: 105 KTPGPGAQSALRALARSGMKIGRI 128
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 3 IFASFNDTFVHVT 41
IFASFNDTF+HVT
Sbjct: 32 IFASFNDTFIHVT 44
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 73 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 165
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 73 VTGGMKVKADRDEASPYAAMLAAQDVA 153
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 31.1 bits (67), Expect = 0.53
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +3
Query: 180 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWPH*RCHPRTIRLYP*EGWPKRTQA 359
G H PC+ W + W WC SG C + WP + R+YP G P + A
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWPV-GVLVKGGRIYPGGGLPSKELA 399
>06_03_0265 - 18923597-18924367,18924459-18924704
Length = 338
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 27 FVHVTR-FIRPGNYRPCHWWHEGEG*P**SVTLRCYVGGT 143
F TR ++ GN RP HWW E V L+C V T
Sbjct: 303 FADFTRAMVKMGNIRPKHWWTPAE------VRLKCSVANT 336
>09_03_0201 -
13466189-13466422,13466508-13467280,13467490-13467637,
13468176-13468313
Length = 430
Score = 27.9 bits (59), Expect = 4.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 193 LCARPLCQEFCISLLHPV 140
LC R LC+EFC+ + P+
Sbjct: 51 LCTRDLCEEFCLLRISPL 68
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 165 NSWHNGLAHKAPCYWWKQNKDPWSWC 242
+ W GL +P Y + N D + WC
Sbjct: 305 DGWQEGLITFSPTYKYHPNSDQYYWC 330
>05_03_0656 - 16676406-16676654
Length = 82
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 135 GGTGCSREMQNSWHNGLAHKAPCYWWKQNKD 227
GG G + + H+GLA A +WW D
Sbjct: 33 GGGGGEAASRRAGHSGLASGARGWWWNSGDD 63
>06_03_0264 - 18916879-18916920,18917871-18918563
Length = 244
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 36 VTRFIRPGNYRPCHWWHEGE 95
V ++ GN RP HWW E
Sbjct: 212 VRAMVKMGNIRPKHWWTPAE 231
>06_03_0263 - 18910447-18911217,18911311-18911556
Length = 338
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 48 IRPGNYRPCHWWHEGEG*P**SVTLRCYVGGT 143
++ GN RP HWW E V L+C V T
Sbjct: 311 VKMGNIRPKHWWTPTE------VRLKCSVANT 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,476,290
Number of Sequences: 37544
Number of extensions: 230066
Number of successful extensions: 572
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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