Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M19
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0338 + 7426999-7428322,7428390-7428646                           28   5.9  
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     28   5.9  
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    27   7.7  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   7.7  

>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 242 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 102
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
 Frame = +1

Query: 256 RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 363
           R      +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 17  RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>06_03_1130 -
           27826384-27827039,27827800-27828031,27828120-27828491,
           27829243-27829449,27829611-27829704,27829806-27829870,
           27829946-27830398,27830467-27830760,27830837-27831295,
           27831367-27831588,27831755-27831968,27832039-27832494,
           27833280-27833389,27833468-27833644,27833758-27833979,
           27834048-27834167,27834274-27834383,27834552-27834607,
           27835252-27835440,27835602-27835775,27836066-27836281,
           27837066-27837106,27837971-27837986,27838330-27838415,
           27838737-27838910,27839093-27839149,27839720-27840064,
           27840175-27840216,27840377-27840496,27840575-27840724,
           27840830-27841534,27841609-27841954,27842978-27843080,
           27844817-27844860,27845905-27846101,27846322-27846344,
           27846802-27847122,27847406-27847579,27847843-27848047,
           27848817-27848880,27850097-27850278,27850291-27850350,
           27850688-27850748,27851249-27851313,27851491-27851569,
           27851656-27852021,27852442-27852790,27852887-27852989,
           27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 87  VRLFNTRIRFRMKLRYYAYSVSVLPIGRP 1
           +RL N+R     KLRY   SVS +P   P
Sbjct: 351 IRLANSRASINGKLRYAVNSVSFIPADTP 379


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 127 RIARREQKLKEHGASSCISGKRGRRC 204
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,976,474
Number of Sequences: 37544
Number of extensions: 247721
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)