Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M17
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...   304   8e-84
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.75 
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    28   1.3  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    28   1.7  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   4.0  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   4.0  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    26   7.0  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   9.3  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    25   9.3  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score =  304 bits (747), Expect = 8e-84
 Identities = 145/243 (59%), Positives = 181/243 (74%), Gaps = 1/243 (0%)
 Frame = +3

Query: 54  MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 233
           MPQNEYIE   + +GRR D+                      RGIKAK++ ++RR EKIQ
Sbjct: 1   MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60

Query: 234 MKKKIKAHEEKNV-KHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 410
           MKK IK HEE+N  +  ++   +GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61  MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120

Query: 411 IPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKK 590
           +P+VR  A+ E+FKV+++GKSK+ +WKRM+TK TFVG+ FTR+P K+ERFIRPMALR KK
Sbjct: 121 LPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKK 180

Query: 591 AHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGK 770
           A+VTH EL  T  LPIIGVKKNP S  YT LGV+TKGTVIEVN+SELGLVT  GKVVWGK
Sbjct: 181 ANVTHKELGVTMQLPIIGVKKNPQSPTYTQLGVLTKGTVIEVNVSELGLVTSGGKVVWGK 240

Query: 771 YAQ 779
           YAQ
Sbjct: 241 YAQ 243


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -1

Query: 299 FGDLLCVMFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSF-TLP 126
           F  LL   F +L F+ F F F    F++   I YF SF    F  LF  F+ +  F +  
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFL 170

Query: 125 FSL 117
           FSL
Sbjct: 171 FSL 173


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 567 PMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 689
           PM   F +    HP  K  FC+P + ++  P       LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 22/84 (26%), Positives = 45/84 (53%)
 Frame = +3

Query: 210 ERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 389
           E+ + K+++ ++     +K ++  TEK+ +  +     +R VQS  +   +M +QK +E 
Sbjct: 82  EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140

Query: 390 AGKWDVPIPKVRAQADAEVFKVLK 461
             K+     KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 426  AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 563
            A  +++  K+L +   K+   KR+V+++T +  N T    + +R++
Sbjct: 883  ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -1

Query: 260 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 138
           FV  D FL+   LF    LI +F+     F  LFS F    S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 279 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 413
           N  K +E    +  +++D+  R+ +LSN+ K        K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 207 KERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPV 314
           + + NE  + + +  ++ E+N   NTE++AE + P+
Sbjct: 98  ENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 54  MPQNEYIERHQKL 92
           +PQ EY+E+H+KL
Sbjct: 195 LPQTEYLEKHKKL 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,164
Number of Sequences: 5004
Number of extensions: 55698
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)