Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M06
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.0  

>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 629 VNIDVFLMSSIPTTDTAAHTF 567
           +NID  L  S+  TDT  HTF
Sbjct: 219 INIDEHLSQSLHATDTETHTF 239


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 454 LKLYSETKMIFENFGHSNMYYCDNERYVELSVDERAYSNV-CAAVSVVGMLDIRKT 618
           L L +E K++    GH N+Y+ D  +++EL+   R  ++V    +S +  +D+ +T
Sbjct: 99  LYLCTERKVVAVIGGH-NVYHVDKTQFIELNPSRRHNTSVERKCMSSIEKVDLART 153


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = +2

Query: 161  LMFLTCLALFDIVRL---CMNDEDTTKRKLRLWSVLPYEVIKNKMKGINQLEEEQIKSET 331
            L+ LT   L D ++    C ND D      RL   L  + +++ ++     +E ++ S T
Sbjct: 3179 LLALTMETLVDQIQAKFKCKNDGDA----FRLVVALLNDAVQHSIRLGIVTDEMKLPSST 3234

Query: 332  ESKPYIISETV**NYIKFFIH*LIAQNSNVICSRAIKIQEC*NYIPKL 475
            ES   + ++ +  +Y K         NSN + S   K+++  +Y  +L
Sbjct: 3235 ESNLSLFADNILPDYCKQLFKEDFIVNSNGLKSYIFKLRKWRSYFERL 3282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,286
Number of Sequences: 5004
Number of extensions: 50700
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)