Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M05
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...   302   5e-83
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    69   9e-13
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    33   0.069
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   4.5  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   6.0  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    26   6.0  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    26   7.9  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   7.9  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score =  302 bits (741), Expect = 5e-83
 Identities = 148/255 (58%), Positives = 185/255 (72%), Gaps = 1/255 (0%)
 Frame = +3

Query: 102 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 278
           MDEEYDVIVLGTGL EC+LSG+LSV GKKVLHIDRN YYG +SAS+  L +L+A F    
Sbjct: 1   MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLN-LTQLYALFRPGE 59

Query: 279 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 458
              E+ GR RDW VDL+PKFLMANG L  +LI+T VTRY+EFK I GSYVY+ G+I+KVP
Sbjct: 60  QRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVP 119

Query: 459 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRN 638
            ++ EAL S LM +FEKRR + FL +V +++E+D  T+KD +    +M+S++ KFGL   
Sbjct: 120 GNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSG 179

Query: 639 TQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDXXXXXXXXXXXXXXXXXGELPQGXAR 818
           TQDF GHA+ALYLDD YL++PA +T  RI LY+                  GELPQG AR
Sbjct: 180 TQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKFGKSPYIYPLYGLGELPQGFAR 239

Query: 819 LSAIYGGTYMLDKPI 863
           LSAIYGGTYML++P+
Sbjct: 240 LSAIYGGTYMLNQPV 254


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 71/276 (25%), Positives = 113/276 (40%), Gaps = 26/276 (9%)
 Frame = +3

Query: 114 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT--PLEELFAKFNAPAPD 287
           YDVI++GT L+  ILS  LS + ++VLHID N +YG    S+T   LE++  K       
Sbjct: 7   YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIKKVDSS 66

Query: 288 ETYGRG------------RDWNVDLIPK-----------FLMANGLLVKLLIHTGVTRYL 398
           +                 +  N DLIPK            + A+  LVKLL  T + +YL
Sbjct: 67  QILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKIYKYL 126

Query: 399 EFKSIEG-SYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWK 575
             K       +    +  KVP  + +   +  + +  KR    F+ +V +  +E  +   
Sbjct: 127 LLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNLV 186

Query: 576 DFDPSTANMQSLYDKFGLDRNTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDXXXXX 755
               S    + L + F L    ++   + L   L  +   + A+ T+  +K +       
Sbjct: 187 KEWESKPFYKFLEEVFQLSGAIEESIIYGLCQSLSKDIPTKDALDTV--LKYFHSFGMYG 244

Query: 756 XXXXXXXXXXXXGELPQGXARLSAIYGGTYMLDKPI 863
                        EL QG  R SA+ GGT+ML + I
Sbjct: 245 DYSYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAI 280


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 32.7 bits (71), Expect = 0.069
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 108 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 209
           ++ D+I++G G+  C L   L   G+KVL ++R+
Sbjct: 4   QDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 180 GKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 350
           GKK +  +RN Y   ++    PL     K + P+  ++  + +D N D   + L+ N
Sbjct: 2   GKKSVSFNRNNYKKRKNERTEPLPRRIFKNDKPSKFKSKRKEKDKNSDAYDEMLLNN 58


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 246 LEELFAKFNAPAPDETYGRGRDWNVDLIPKF 338
           L  L  K  A AP +TY   + W    +PKF
Sbjct: 32  LRSLIEKEEAAAPPKTYEDFKFWKTQPVPKF 62


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 522 NFLIYVQDFQEEDAKTWKDFDPSTANM 602
           N LIY+ + Q     TWKD+DP++  M
Sbjct: 22  NELIYIDEEQ-----TWKDYDPNSLKM 43


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 169 CRFLGRRFCTSIAISTTVVNLRQL 240
           CR L R+F  ++ +ST++V ++QL
Sbjct: 116 CRILTRKFRLAVYLSTSLVYIKQL 139


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 276 PAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV 386
           P P +  G  + + V     F++ANG L+K LIH  +
Sbjct: 14  PRPAQALGINQPF-VSAYLSFVLANGFLLKWLIHYSI 49


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = -1

Query: 503 KHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVPGDARVNKQFD*QSISHQKLRNQ 324
           K +HK+ ++S FL D +  DF+ F+ I   D +  Q   + R   +F   S   + +R++
Sbjct: 378 KFSHKMLKRSQFLNDHFDADFN-FIQI-DHDPITNQ---ETRKPVKF---SKPTKDIRSR 429

Query: 323 V-NVPVSTSTVCFIRCRCVELSEQLL 249
           +  VP ST     IR   ++L E+ L
Sbjct: 430 LKEVPTSTDEEFIIRQELMDLLEKCL 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,741,020
Number of Sequences: 5004
Number of extensions: 81363
Number of successful extensions: 246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)