Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M05
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical p...   372   e-103
Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical p...   372   e-103
U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.      372   e-103
AC091125-8|AAP46267.1|  353|Caenorhabditis elegans Hypothetical ...    58   6e-09
AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical ...    58   6e-09
AF036705-5|AAB95172.1|  544|Caenorhabditis elegans Hypothetical ...    30   1.9  
U97007-7|AAB52292.1|  441|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AF024499-6|AAB70354.1|  560|Caenorhabditis elegans Hypothetical ...    29   5.7  
M11498-1|AAA28163.1|  282|Caenorhabditis elegans protein ( C.ele...    28   7.5  
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ...    28   7.5  
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ...    28   7.5  

>Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10b protein.
          Length = 459

 Score =  372 bits (915), Expect = e-103
 Identities = 176/256 (68%), Positives = 197/256 (76%), Gaps = 2/256 (0%)
 Frame = +3

Query: 102 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 281
           MDEEYD IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P 
Sbjct: 1   MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60

Query: 282 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 455
             P +  GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61  AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120

Query: 456 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDR 635
           P D+ EALA+ LMGMFEKRRF+ FL++VQ F E    TW+  DP  + MQ +Y+KFGLD 
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDE 180

Query: 636 NTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDXXXXXXXXXXXXXXXXXGELPQGXA 815
           NT DFTGHALALY DD +  QP    + +I+LYSD                 GELPQG A
Sbjct: 181 NTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQGFA 240

Query: 816 RLSAIYGGTYMLDKPI 863
           RLSAIYGGTYMLDKP+
Sbjct: 241 RLSAIYGGTYMLDKPV 256


>Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10a protein.
          Length = 444

 Score =  372 bits (915), Expect = e-103
 Identities = 176/256 (68%), Positives = 197/256 (76%), Gaps = 2/256 (0%)
 Frame = +3

Query: 102 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 281
           MDEEYD IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P 
Sbjct: 1   MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60

Query: 282 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 455
             P +  GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61  AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120

Query: 456 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDR 635
           P D+ EALA+ LMGMFEKRRF+ FL++VQ F E    TW+  DP  + MQ +Y+KFGLD 
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDE 180

Query: 636 NTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDXXXXXXXXXXXXXXXXXGELPQGXA 815
           NT DFTGHALALY DD +  QP    + +I+LYSD                 GELPQG A
Sbjct: 181 NTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQGFA 240

Query: 816 RLSAIYGGTYMLDKPI 863
           RLSAIYGGTYMLDKP+
Sbjct: 241 RLSAIYGGTYMLDKPV 256


>U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.
          Length = 444

 Score =  372 bits (915), Expect = e-103
 Identities = 176/256 (68%), Positives = 197/256 (76%), Gaps = 2/256 (0%)
 Frame = +3

Query: 102 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 281
           MDEEYD IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P 
Sbjct: 1   MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60

Query: 282 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 455
             P +  GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61  AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120

Query: 456 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDR 635
           P D+ EALA+ LMGMFEKRRF+ FL++VQ F E    TW+  DP  + MQ +Y+KFGLD 
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDE 180

Query: 636 NTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDXXXXXXXXXXXXXXXXXGELPQGXA 815
           NT DFTGHALALY DD +  QP    + +I+LYSD                 GELPQG A
Sbjct: 181 NTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQGFA 240

Query: 816 RLSAIYGGTYMLDKPI 863
           RLSAIYGGTYMLDKP+
Sbjct: 241 RLSAIYGGTYMLDKPV 256


>AC091125-8|AAP46267.1|  353|Caenorhabditis elegans Hypothetical
           protein Y67D2.1b protein.
          Length = 353

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 8/194 (4%)
 Frame = +3

Query: 306 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-----YKGGKISKVPVDQK 470
           R +++DL+PK L++ G +V+ L  + V+ Y EFK +            G  ++ VP  + 
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSKG 181

Query: 471 EALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTAN--MQSLYDKFGLDRNTQ 644
           E   S+ + + EKR    F+ +   +  +D +  +      A+       ++ G+ +  Q
Sbjct: 182 EIFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLEQMGVGKTLQ 241

Query: 645 DFTGHALALYLDDNYLQQPAIQT-IRRIKLYSDXXXXXXXXXXXXXXXXXGELPQGXARL 821
            F  + + +       Q+P   T +     + D                 GEL Q   RL
Sbjct: 242 SFIINTIGI-----LQQRPTAMTGMLASCQFMDSVGHFGPSPFLFPLYGCGELSQCFCRL 296

Query: 822 SAIYGGTYMLDKPI 863
           +A++G  Y L +P+
Sbjct: 297 AAVFGSLYCLGRPV 310



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/47 (53%), Positives = 34/47 (72%)
 Frame = +3

Query: 102 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 242
           + E  DV+VLGTGL E IL+   + +G  VLH+DRN+YYGG+ +S T
Sbjct: 5   LPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51


>AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical
           protein Y67D2.1a protein.
          Length = 510

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 8/194 (4%)
 Frame = +3

Query: 306 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-----YKGGKISKVPVDQK 470
           R +++DL+PK L++ G +V+ L  + V+ Y EFK +            G  ++ VP  + 
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSKG 181

Query: 471 EALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTAN--MQSLYDKFGLDRNTQ 644
           E   S+ + + EKR    F+ +   +  +D +  +      A+       ++ G+ +  Q
Sbjct: 182 EIFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLEQMGVGKTLQ 241

Query: 645 DFTGHALALYLDDNYLQQPAIQT-IRRIKLYSDXXXXXXXXXXXXXXXXXGELPQGXARL 821
            F  + + +       Q+P   T +     + D                 GEL Q   RL
Sbjct: 242 SFIINTIGI-----LQQRPTAMTGMLASCQFMDSVGHFGPSPFLFPLYGCGELSQCFCRL 296

Query: 822 SAIYGGTYMLDKPI 863
           +A++G  Y L +P+
Sbjct: 297 AAVFGSLYCLGRPV 310



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/47 (53%), Positives = 34/47 (72%)
 Frame = +3

Query: 102 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 242
           + E  DV+VLGTGL E IL+   + +G  VLH+DRN+YYGG+ +S T
Sbjct: 5   LPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51


>AF036705-5|AAB95172.1|  544|Caenorhabditis elegans Hypothetical
           protein F37C4.6 protein.
          Length = 544

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 108 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 236
           + YD I++G G      +  L+ +GKKV  ++R    GG + +
Sbjct: 13  QSYDAIIIGGGHNGLTAAAYLTKAGKKVCVLERRHVVGGAAVT 55


>U97007-7|AAB52292.1|  441|Caenorhabditis elegans Hypothetical
           protein ZC196.3 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 462 DQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP-STANMQSLYDKFGL 629
           ++KE   +D +    K+  + FL Y +DFQ   A+ WK F    + ++Q  Y++  +
Sbjct: 253 EEKEEKVADWIQNCYKQPIKRFLEYFRDFQNV-AREWKYFKRLPSESLQDAYEEISI 308


>AF024499-6|AAB70354.1|  560|Caenorhabditis elegans Hypothetical
           protein F42G2.2 protein.
          Length = 560

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 691 K*LSSK*RARACPVKSWVFLSNPNLSYSD 605
           K L++K   R C + +W ++ +P+ SYSD
Sbjct: 269 KVLNNKRELRRCTMGNWFYIVHPDYSYSD 297


>M11498-1|AAA28163.1|  282|Caenorhabditis elegans protein (
           C.elegans vitellogenin4 (yp170A) gene. ).
          Length = 282

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
 Frame = +3

Query: 390 RYLEFKSIE----GSYVYKGGKISKVPVDQKEALASDLMGMFE---KRRFRNFLIYVQDF 548
           RY+  + I+     S++ +  +  K+   ++  L+ +L  + E   + + RN L+    F
Sbjct: 66  RYIHLQLIDIQYSASHIPQSEQWPKIESLEQRELSDELKELLELPFRAQIRNGLVSEIQF 125

Query: 549 QEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQD 647
             EDA+  K+   S  N+ SL     +D  +QD
Sbjct: 126 SSEDAEWSKNAKRSILNLFSLRKSAPVDEMSQD 158


>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 3 protein.
          Length = 1603

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
 Frame = +3

Query: 390 RYLEFKSIE----GSYVYKGGKISKVPVDQKEALASDLMGMFE---KRRFRNFLIYVQDF 548
           RY+  + I+     S++ +  +  K+   ++  L+ +L  + E   + + RN L+    F
Sbjct: 66  RYIHLQLIDIQYSASHIPQSEQWPKIKSLEQRELSDELKELLELPFRAQIRNGLVSEIQF 125

Query: 549 QEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQD 647
             EDA+  K+   S  N+ SL     +D  +QD
Sbjct: 126 SSEDAEWSKNAKRSILNLFSLRKSAPVDEMSQD 158


>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 4 protein.
          Length = 1603

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
 Frame = +3

Query: 390 RYLEFKSIE----GSYVYKGGKISKVPVDQKEALASDLMGMFE---KRRFRNFLIYVQDF 548
           RY+  + I+     S++ +  +  K+   ++  L+ +L  + E   + + RN L+    F
Sbjct: 66  RYIHLQLIDIQYSASHIPQSEQWPKIESLEQRELSDELKELLELPFRAQIRNGLVSEIQF 125

Query: 549 QEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQD 647
             EDA+  K+   S  N+ SL     +D  +QD
Sbjct: 126 SSEDAEWSKNAKRSILNLFSLRKSAPVDEMSQD 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,545,498
Number of Sequences: 27780
Number of extensions: 451985
Number of successful extensions: 1134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)