Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_M03
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 30 0.40
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 3.7
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 27 3.7
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 3.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.9
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 26 4.9
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 26 6.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 6.5
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.5
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.6
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 29.9 bits (64), Expect = 0.40
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 400 CYCKQGWLLVGRPKPTWNINGYRWHSGCNKC 492
C+C + W V W G WHS C KC
Sbjct: 22 CFCIKCWESVPSTSQVW-FGGKCWHSDCFKC 51
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 518 PDDATDSENEDEKLQHVTLSVDSYYGEPNSIIKYGKTIN 634
PD+ + E E ++ +H+ + YYG I YG ++
Sbjct: 137 PDEFSFEEREFKEREHLRSWLTDYYGRDQFISYYGNRVS 175
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 655 QSLRIETRENSLIGFQNDHCYTSLT 729
+++ +E RE +G + DHCY L+
Sbjct: 338 RAMTVEIREGRGVGPEKDHCYLQLS 362
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 71 FKGVHSFLINCGKTYFLSHSTL*EITLIPSVFS 169
F+ + SF IN ++FL+HS I L F+
Sbjct: 659 FQALFSFAINWTPSFFLNHSNFENIALSKETFN 691
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 4.9
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +2
Query: 392 SVVVIVNKDGSLSVDQNLLGTLMGTDGTQGAISVVRVGHEGKPDDATDSENEDEKLQHVT 571
SV ++ DG+ + +L L +D + +V R EG P SE E HV
Sbjct: 251 SVRPSISVDGTSRGEDDLTHKL--SDIIKANANVRRCEQEGAPAHIV-SEYEQLLQFHVA 307
Query: 572 LSVDSYY-GEPNSIIKYGKTINTVVLKCYSR*GLKRGKIV 688
+D+ G+P ++ K G+ + ++ + + G RG ++
Sbjct: 308 TYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLM 347
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/60 (21%), Positives = 26/60 (43%)
Frame = +2
Query: 329 MSNTVITNYTDLNGPSTKAESSVVVIVNKDGSLSVDQNLLGTLMGTDGTQGAISVVRVGH 508
+S+ +I + + +N PS V ++ N DG +D+ L ++ + V H
Sbjct: 316 VSDMLIQSLSIINSPSFSLGKIVFLVHNIDGESLIDERFQSALAAIASSKNVYFIASVDH 375
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 573 FLWIVIMVNLTVSSNMVK 626
FLWIV M+N ++ N VK
Sbjct: 411 FLWIVHMINASLDHNKVK 428
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 6.5
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +2
Query: 371 PSTKAESSVVVIVNKDGSLSVDQNLLGTLMGTDGTQGAISVVRVGHEGKPDDATDSENED 550
P KAE SVV+ + S D + + D + ++ + + K DD+ S N+
Sbjct: 510 PENKAEDSVVLKSSVPEDKSEDSVPSKSSVLEDKHENSVEI-----DKKADDSLPSNNKT 564
Query: 551 EKLQHVTLSVDSYYGEPNS 607
E + + Y EPN+
Sbjct: 565 EGYTPSVVREEKNYSEPNA 583
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 694 QSNYFPSFQSLTTVTFQHHCI 632
Q N+FP F S+ V + HH +
Sbjct: 262 QGNFFPLFLSILCVGYYHHLL 282
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 161 VFSLPALCLVYEVWELFKMAPEA*HRMRHFWTLCIQKQMAI 283
V A C V E+W L+K+ +A +H + CI K++ +
Sbjct: 1344 VLGTSAQC-VTEIWNLWKLRTKATFGGQHDFQHCINKRLIL 1383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,392
Number of Sequences: 5004
Number of extensions: 61831
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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