Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M03
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0298 + 17041206-17041712                                         28   6.8  
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340...    28   9.0  
04_01_0301 + 4016588-4016627,4016715-4018837                           28   9.0  

>12_02_0298 + 17041206-17041712
          Length = 168

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 382 GGKFCCCYCKQGWLLVGRPKPTWNINGYRWHSG 480
           GG  C C+C+  W     P   W+ +G    +G
Sbjct: 117 GGACCWCHCRACWTEPSPPNSAWSKSGKPTEAG 149


>12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,
            3404071-3404562,3404718-3404821,3404913-3404994,
            3405085-3405441,3405532-3406089,3406376-3406479,
            3406575-3406650,3406764-3406898,3407192-3407494,
            3407581-3408345,3409459-3412591,3412763-3412882
          Length = 2445

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
 Frame = +2

Query: 326  KMSNTVITNYTDLNGPSTK-----AESSVVVIVNKDGSLSV 433
            K+S+TV  ++  +N PSTK     +ES++ ++ N++ +L++
Sbjct: 2372 KISSTVKPSHIAMNAPSTKQVDNLSESAIALLRNRENTLAI 2412


>04_01_0301 + 4016588-4016627,4016715-4018837
          Length = 720

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 539 ENEDEKLQHVTLSVDSYYGEPNSIIKYGKTINTVVLK 649
           E E++KLQ   L+++  YG+  + +K+   I  VV++
Sbjct: 356 EGENDKLQSEVLAIEEKYGQSEAKVKWLNQILRVVVE 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,392,633
Number of Sequences: 37544
Number of extensions: 367631
Number of successful extensions: 779
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)