Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M03
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-2|CAB01903.1|  342|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z29095-10|CAA82356.3|  163|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine re...    28   8.0  

>Z79605-2|CAB01903.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK678.2 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = -3

Query: 385 RLCGRSIKVSVVGDYCIRHFSL*KLTPFTCNSSIYSHLLLNAQRPKMTHSMLRF 224
           +L GR I++ V  +  +    L    P   N S+Y   +LN Q+ + ++++L++
Sbjct: 232 QLVGRMIQLRVTKEEYLLMAVLFACNPTDINISLYGKTILNTQQKEFSNALLQY 285


>Z29095-10|CAA82356.3|  163|Caenorhabditis elegans Hypothetical
           protein R10E11.9 protein.
          Length = 163

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 394 CCCYCKQGWLLVGRPKPTWNI 456
           CCC C   W+ VGR K + NI
Sbjct: 88  CCCCCV-SWIFVGRKKKSSNI 107


>Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical
           protein ZC443.1 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 440 NLLGTLMGTDGTQGAISVVRVGHEGKP--DDATDSENEDEKLQHVTLSVDSYYGEPNSII 613
           N+L T   T G+ G +SV  VG  G+P  +   +SENE    +HV      Y   P  I+
Sbjct: 195 NILITAYATLGSPGRMSV--VGSNGRPLFESTQNSENEMND-KHVKALAQKYSKTPAQIL 251


>AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 5 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 382 GGKFCCCYC---KQGWLLVGRPKPTWNINGYRWHSGCN 486
           GGKFCCC C   + G    GR +P   +    +   CN
Sbjct: 298 GGKFCCCLCPANRIGADQTGRKRPPTKVKD-TFGKNCN 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,900,789
Number of Sequences: 27780
Number of extensions: 361153
Number of successful extensions: 880
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)